miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29030 3' -60.2 NC_006146.1 + 2829 0.66 0.806944
Target:  5'- gGUGGCGgAaugucacgccaggagCGGGGUgcCGGuuGuGGCCg -3'
miRNA:   3'- gCAUCGCgU---------------GCUCCA--GCCggCuCCGG- -5'
29030 3' -60.2 NC_006146.1 + 130216 0.66 0.80356
Target:  5'- uGUAGaaaGCACcucaGGGUggUGGCC-AGGCCg -3'
miRNA:   3'- gCAUCg--CGUGc---UCCA--GCCGGcUCCGG- -5'
29030 3' -60.2 NC_006146.1 + 54690 0.66 0.80356
Target:  5'- gGUGGCGUAaaugagcuCGAGGggaCGGC--GGGCCc -3'
miRNA:   3'- gCAUCGCGU--------GCUCCa--GCCGgcUCCGG- -5'
29030 3' -60.2 NC_006146.1 + 89797 0.66 0.80356
Target:  5'- cCGUGGacgaGgACGAGGcagaGGCgGGGGCg -3'
miRNA:   3'- -GCAUCg---CgUGCUCCag--CCGgCUCCGg -5'
29030 3' -60.2 NC_006146.1 + 43321 0.66 0.80356
Target:  5'- --cGGCcgGCGCGGccUCGGCCGcccaGGGCCa -3'
miRNA:   3'- gcaUCG--CGUGCUccAGCCGGC----UCCGG- -5'
29030 3' -60.2 NC_006146.1 + 55677 0.66 0.80356
Target:  5'- gCGUugaaGGCcaGCACGGGcaCGGCCGccGCCg -3'
miRNA:   3'- -GCA----UCG--CGUGCUCcaGCCGGCucCGG- -5'
29030 3' -60.2 NC_006146.1 + 128271 0.66 0.80356
Target:  5'- aCGUgaGGCcCACGGcGG-CGGCCGAG-CCc -3'
miRNA:   3'- -GCA--UCGcGUGCU-CCaGCCGGCUCcGG- -5'
29030 3' -60.2 NC_006146.1 + 112121 0.66 0.80356
Target:  5'- gGUGGUGCugGuGGU-GGCCucGGUg -3'
miRNA:   3'- gCAUCGCGugCuCCAgCCGGcuCCGg -5'
29030 3' -60.2 NC_006146.1 + 149832 0.66 0.80356
Target:  5'- gGUGGUGU---GGG-CGGCCaGGGCCu -3'
miRNA:   3'- gCAUCGCGugcUCCaGCCGGcUCCGG- -5'
29030 3' -60.2 NC_006146.1 + 156906 0.66 0.80356
Target:  5'- -----aGCACcAGccCGGCCGAGGCCu -3'
miRNA:   3'- gcaucgCGUGcUCcaGCCGGCUCCGG- -5'
29030 3' -60.2 NC_006146.1 + 122478 0.66 0.80356
Target:  5'- gCG-AGCGUugcuCGGGGaCGGCggCGGGGUCg -3'
miRNA:   3'- -GCaUCGCGu---GCUCCaGCCG--GCUCCGG- -5'
29030 3' -60.2 NC_006146.1 + 43632 0.66 0.80356
Target:  5'- aGUGG-GCgGCGGGGcgUGGCCGccuggggagagGGGCCc -3'
miRNA:   3'- gCAUCgCG-UGCUCCa-GCCGGC-----------UCCGG- -5'
29030 3' -60.2 NC_006146.1 + 42312 0.66 0.80271
Target:  5'- cCGgAGUGCccuGCGAGGUugcugacUGGCCcggGAGGUCa -3'
miRNA:   3'- -GCaUCGCG---UGCUCCA-------GCCGG---CUCCGG- -5'
29030 3' -60.2 NC_006146.1 + 38944 0.66 0.795
Target:  5'- --aAGCGguCGAGGgUGGCCuuGGCa -3'
miRNA:   3'- gcaUCGCguGCUCCaGCCGGcuCCGg -5'
29030 3' -60.2 NC_006146.1 + 131069 0.66 0.795
Target:  5'- --cGGCcCACu--GUgCGGCCGAGGCCg -3'
miRNA:   3'- gcaUCGcGUGcucCA-GCCGGCUCCGG- -5'
29030 3' -60.2 NC_006146.1 + 57265 0.66 0.792405
Target:  5'- --cAGCGCaACGGGGgCGagacaacauccagcGCCGGGGCa -3'
miRNA:   3'- gcaUCGCG-UGCUCCaGC--------------CGGCUCCGg -5'
29030 3' -60.2 NC_006146.1 + 112994 0.66 0.786306
Target:  5'- cCGU-GCGCGUGAcGGacUCGGCCuuGAGGCg -3'
miRNA:   3'- -GCAuCGCGUGCU-CC--AGCCGG--CUCCGg -5'
29030 3' -60.2 NC_006146.1 + 13981 0.66 0.786306
Target:  5'- cCGUcAGCGC-CGccacccAGGccUCGGCCG-GGCUg -3'
miRNA:   3'- -GCA-UCGCGuGC------UCC--AGCCGGCuCCGG- -5'
29030 3' -60.2 NC_006146.1 + 40564 0.66 0.786306
Target:  5'- gGUGGUGCgggggacgcugAUGAGGUCcuGGCCcugGGcGGCCg -3'
miRNA:   3'- gCAUCGCG-----------UGCUCCAG--CCGG---CU-CCGG- -5'
29030 3' -60.2 NC_006146.1 + 33113 0.66 0.786306
Target:  5'- gGUGGcCGCcgGCG-GGUUcGCCG-GGCCg -3'
miRNA:   3'- gCAUC-GCG--UGCuCCAGcCGGCuCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.