miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29030 3' -60.2 NC_006146.1 + 130216 0.66 0.80356
Target:  5'- uGUAGaaaGCACcucaGGGUggUGGCC-AGGCCg -3'
miRNA:   3'- gCAUCg--CGUGc---UCCA--GCCGGcUCCGG- -5'
29030 3' -60.2 NC_006146.1 + 126797 0.66 0.777486
Target:  5'- gGUucGGCGC-CGAGcGcgCGGcCCGAGGUg -3'
miRNA:   3'- gCA--UCGCGuGCUC-Ca-GCC-GGCUCCGg -5'
29030 3' -60.2 NC_006146.1 + 125337 0.66 0.768547
Target:  5'- -cUGGCuGCGCGAGcUCcucGCgGAGGCCa -3'
miRNA:   3'- gcAUCG-CGUGCUCcAGc--CGgCUCCGG- -5'
29030 3' -60.2 NC_006146.1 + 111969 0.66 0.768547
Target:  5'- --cAGCGCAC-AGaUUGGCCGAguucauGGCCu -3'
miRNA:   3'- gcaUCGCGUGcUCcAGCCGGCU------CCGG- -5'
29030 3' -60.2 NC_006146.1 + 89027 0.66 0.768547
Target:  5'- cCGUGGaUGUu--GGGUCugaGGCCGAGGCUc -3'
miRNA:   3'- -GCAUC-GCGugcUCCAG---CCGGCUCCGG- -5'
29030 3' -60.2 NC_006146.1 + 47634 0.66 0.768547
Target:  5'- aCGUGGUGCuACGGGa---GCUGAGGCUg -3'
miRNA:   3'- -GCAUCGCG-UGCUCcagcCGGCUCCGG- -5'
29030 3' -60.2 NC_006146.1 + 115553 0.66 0.768547
Target:  5'- gGUGGCggggGCugGAGG-CGaCCGcGGCCc -3'
miRNA:   3'- gCAUCG----CGugCUCCaGCcGGCuCCGG- -5'
29030 3' -60.2 NC_006146.1 + 122534 0.66 0.759498
Target:  5'- gGUGGUucGCGgaacuCGAGGcCGGCCcgcuGGCCa -3'
miRNA:   3'- gCAUCG--CGU-----GCUCCaGCCGGcu--CCGG- -5'
29030 3' -60.2 NC_006146.1 + 126068 0.66 0.758587
Target:  5'- gGUAaacGgGCACGAGGggcgcCGGCCcccuacaGAGGUCc -3'
miRNA:   3'- gCAU---CgCGUGCUCCa----GCCGG-------CUCCGG- -5'
29030 3' -60.2 NC_006146.1 + 10992 0.66 0.777486
Target:  5'- -aUGGUGCcccccaucuuCGAGGgcccCGGCCucGAGGCCc -3'
miRNA:   3'- gcAUCGCGu---------GCUCCa---GCCGG--CUCCGG- -5'
29030 3' -60.2 NC_006146.1 + 61742 0.66 0.777486
Target:  5'- --aAGgGC-CGggaccgaaaccaAGGcagCGGCCGAGGCCu -3'
miRNA:   3'- gcaUCgCGuGC------------UCCa--GCCGGCUCCGG- -5'
29030 3' -60.2 NC_006146.1 + 71049 0.66 0.778373
Target:  5'- cCGUAcGcCGCGCGGGGaCGucuucaccuauuccaCCGAGGCCc -3'
miRNA:   3'- -GCAU-C-GCGUGCUCCaGCc--------------GGCUCCGG- -5'
29030 3' -60.2 NC_006146.1 + 122478 0.66 0.80356
Target:  5'- gCG-AGCGUugcuCGGGGaCGGCggCGGGGUCg -3'
miRNA:   3'- -GCaUCGCGu---GCUCCaGCCG--GCUCCGG- -5'
29030 3' -60.2 NC_006146.1 + 43632 0.66 0.80356
Target:  5'- aGUGG-GCgGCGGGGcgUGGCCGccuggggagagGGGCCc -3'
miRNA:   3'- gCAUCgCG-UGCUCCa-GCCGGC-----------UCCGG- -5'
29030 3' -60.2 NC_006146.1 + 57265 0.66 0.792405
Target:  5'- --cAGCGCaACGGGGgCGagacaacauccagcGCCGGGGCa -3'
miRNA:   3'- gcaUCGCG-UGCUCCaGC--------------CGGCUCCGg -5'
29030 3' -60.2 NC_006146.1 + 122995 0.66 0.786306
Target:  5'- --aGGC-CACGGGGgacuucuucUCGGagcugcugaCCGAGGCCg -3'
miRNA:   3'- gcaUCGcGUGCUCC---------AGCC---------GGCUCCGG- -5'
29030 3' -60.2 NC_006146.1 + 112994 0.66 0.786306
Target:  5'- cCGU-GCGCGUGAcGGacUCGGCCuuGAGGCg -3'
miRNA:   3'- -GCAuCGCGUGCU-CC--AGCCGG--CUCCGg -5'
29030 3' -60.2 NC_006146.1 + 13981 0.66 0.786306
Target:  5'- cCGUcAGCGC-CGccacccAGGccUCGGCCG-GGCUg -3'
miRNA:   3'- -GCA-UCGCGuGC------UCC--AGCCGGCuCCGG- -5'
29030 3' -60.2 NC_006146.1 + 40564 0.66 0.786306
Target:  5'- gGUGGUGCgggggacgcugAUGAGGUCcuGGCCcugGGcGGCCg -3'
miRNA:   3'- gCAUCGCG-----------UGCUCCAG--CCGG---CU-CCGG- -5'
29030 3' -60.2 NC_006146.1 + 22722 0.66 0.786306
Target:  5'- cCGUcuGGaCGCACGuGGgcaUGGCCGuagagaagacccGGGCCc -3'
miRNA:   3'- -GCA--UC-GCGUGCuCCa--GCCGGC------------UCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.