miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29030 3' -60.2 NC_006146.1 + 67610 1.12 0.000959
Target:  5'- aCGUAGCGCACGAGGUCGGCCGAGGCCa -3'
miRNA:   3'- -GCAUCGCGUGCUCCAGCCGGCUCCGG- -5'
29030 3' -60.2 NC_006146.1 + 75259 0.79 0.176695
Target:  5'- gCGUggGGUGCACGGGGaUGGCCGAGgaGCCg -3'
miRNA:   3'- -GCA--UCGCGUGCUCCaGCCGGCUC--CGG- -5'
29030 3' -60.2 NC_006146.1 + 103660 0.78 0.196301
Target:  5'- aCGUAGCGCAUGgcgggcaucuggggcGGG-CGGUCGAGGUCu -3'
miRNA:   3'- -GCAUCGCGUGC---------------UCCaGCCGGCUCCGG- -5'
29030 3' -60.2 NC_006146.1 + 75479 0.77 0.240126
Target:  5'- uGUGGU-CACGGGGaCGGCgGGGGCCg -3'
miRNA:   3'- gCAUCGcGUGCUCCaGCCGgCUCCGG- -5'
29030 3' -60.2 NC_006146.1 + 70166 0.75 0.294429
Target:  5'- cCGgGGCGCugGuGGcCGG-CGAGGCCg -3'
miRNA:   3'- -GCaUCGCGugCuCCaGCCgGCUCCGG- -5'
29030 3' -60.2 NC_006146.1 + 51025 0.75 0.314545
Target:  5'- gGUAGCGUACGAGGcCGGaucccaCgGAGGCa -3'
miRNA:   3'- gCAUCGCGUGCUCCaGCC------GgCUCCGg -5'
29030 3' -60.2 NC_006146.1 + 88910 0.74 0.342954
Target:  5'- uGUAGgGCACuGGGGcucuugUGGCUGAGGCUg -3'
miRNA:   3'- gCAUCgCGUG-CUCCa-----GCCGGCUCCGG- -5'
29030 3' -60.2 NC_006146.1 + 55027 0.74 0.342954
Target:  5'- --gGGCGgGCGggauggGGGUCggGGCCGGGGCCu -3'
miRNA:   3'- gcaUCGCgUGC------UCCAG--CCGGCUCCGG- -5'
29030 3' -60.2 NC_006146.1 + 98319 0.74 0.365447
Target:  5'- cCGUGGCcgucugGCACGGGGcCGGgCGcGGCCc -3'
miRNA:   3'- -GCAUCG------CGUGCUCCaGCCgGCuCCGG- -5'
29030 3' -60.2 NC_006146.1 + 122608 0.74 0.365447
Target:  5'- gGUGGaGgGCGAGGggcggaggaGGCCGGGGCCc -3'
miRNA:   3'- gCAUCgCgUGCUCCag-------CCGGCUCCGG- -5'
29030 3' -60.2 NC_006146.1 + 24207 0.73 0.372391
Target:  5'- --gGGCcUGCGAGGUUcuguuggGGCCGGGGCCg -3'
miRNA:   3'- gcaUCGcGUGCUCCAG-------CCGGCUCCGG- -5'
29030 3' -60.2 NC_006146.1 + 56294 0.73 0.373168
Target:  5'- aCGUccAGCGCcgccuCGAGGU-GGCCcAGGCCg -3'
miRNA:   3'- -GCA--UCGCGu----GCUCCAgCCGGcUCCGG- -5'
29030 3' -60.2 NC_006146.1 + 147563 0.73 0.373168
Target:  5'- --aGGCGC-UGAGGUCGGUCugcaGGGCCa -3'
miRNA:   3'- gcaUCGCGuGCUCCAGCCGGc---UCCGG- -5'
29030 3' -60.2 NC_006146.1 + 52979 0.73 0.373168
Target:  5'- gGUAGUGCGC-AGGcggaccugcCGGCCGuGGCCg -3'
miRNA:   3'- gCAUCGCGUGcUCCa--------GCCGGCuCCGG- -5'
29030 3' -60.2 NC_006146.1 + 125928 0.73 0.373168
Target:  5'- cCGUcGGCGCACGAGGUCuuGCgGAG-CCa -3'
miRNA:   3'- -GCA-UCGCGUGCUCCAGc-CGgCUCcGG- -5'
29030 3' -60.2 NC_006146.1 + 167011 0.72 0.43022
Target:  5'- --aGGUGCACGuGGU-GGCUGGGGCa -3'
miRNA:   3'- gcaUCGCGUGCuCCAgCCGGCUCCGg -5'
29030 3' -60.2 NC_006146.1 + 161741 0.72 0.438782
Target:  5'- uGUAGC-C-CGGGGguggCGGCUGAGGUCc -3'
miRNA:   3'- gCAUCGcGuGCUCCa---GCCGGCUCCGG- -5'
29030 3' -60.2 NC_006146.1 + 123691 0.72 0.447439
Target:  5'- uCGUGGCG---GAGG-CGGCCaGGGGCCu -3'
miRNA:   3'- -GCAUCGCgugCUCCaGCCGG-CUCCGG- -5'
29030 3' -60.2 NC_006146.1 + 164286 0.72 0.447439
Target:  5'- --aGGCuGCugauuAUGAGGUCcGCCGGGGCCa -3'
miRNA:   3'- gcaUCG-CG-----UGCUCCAGcCGGCUCCGG- -5'
29030 3' -60.2 NC_006146.1 + 57431 0.72 0.447439
Target:  5'- aCGUGGCGCugacauACGAGGaa-GCCG-GGCCg -3'
miRNA:   3'- -GCAUCGCG------UGCUCCagcCGGCuCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.