miRNA display CGI


Results 1 - 20 of 59 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29030 5' -54.2 NC_006146.1 + 55712 0.66 0.962199
Target:  5'- gGGGC-UCUGccCGcCgCUGGCCuCCGCg -3'
miRNA:   3'- aUCCGuAGAUa-GCaG-GAUCGGuGGCG- -5'
29030 5' -54.2 NC_006146.1 + 57169 0.66 0.960062
Target:  5'- cGGGCcgCUaccuuccacgacuucAcCGUCCcGGCUGCCGCc -3'
miRNA:   3'- aUCCGuaGA---------------UaGCAGGaUCGGUGGCG- -5'
29030 5' -54.2 NC_006146.1 + 54025 0.66 0.958593
Target:  5'- cAGGCAcugCUG-CG-CCUGGCCggGCCGg -3'
miRNA:   3'- aUCCGUa--GAUaGCaGGAUCGG--UGGCg -5'
29030 5' -54.2 NC_006146.1 + 25619 0.66 0.958593
Target:  5'- cAGGCGUCc----UCCUGGUCuCCGCu -3'
miRNA:   3'- aUCCGUAGauagcAGGAUCGGuGGCG- -5'
29030 5' -54.2 NC_006146.1 + 16385 0.66 0.958593
Target:  5'- cAGGCGUCc----UCCUGGUCuCCGCu -3'
miRNA:   3'- aUCCGUAGauagcAGGAUCGGuGGCG- -5'
29030 5' -54.2 NC_006146.1 + 64479 0.66 0.958593
Target:  5'- aGGGCAuuUCUGagGUUCUcGGCCAaCCGg -3'
miRNA:   3'- aUCCGU--AGAUagCAGGA-UCGGU-GGCg -5'
29030 5' -54.2 NC_006146.1 + 19463 0.66 0.958593
Target:  5'- cAGGCGUCc----UCCUGGUCuCCGCu -3'
miRNA:   3'- aUCCGUAGauagcAGGAUCGGuGGCG- -5'
29030 5' -54.2 NC_006146.1 + 13307 0.66 0.958593
Target:  5'- cAGGCGUCc----UCCUGGUCuCCGCu -3'
miRNA:   3'- aUCCGUAGauagcAGGAUCGGuGGCG- -5'
29030 5' -54.2 NC_006146.1 + 22541 0.66 0.958593
Target:  5'- cAGGCGUCc----UCCUGGUCuCCGCu -3'
miRNA:   3'- aUCCGUAGauagcAGGAUCGGuGGCG- -5'
29030 5' -54.2 NC_006146.1 + 28697 0.66 0.958593
Target:  5'- cAGGCGUCc----UCCUGGUCuCCGCu -3'
miRNA:   3'- aUCCGUAGauagcAGGAUCGGuGGCG- -5'
29030 5' -54.2 NC_006146.1 + 107635 0.66 0.958593
Target:  5'- aGGGCugucAUCUGcCGUCC-AGCCACUc- -3'
miRNA:   3'- aUCCG----UAGAUaGCAGGaUCGGUGGcg -5'
29030 5' -54.2 NC_006146.1 + 53712 0.66 0.958219
Target:  5'- gGGGCAcguUCcc-CGUCCUcuccgggAGCCGCgGCu -3'
miRNA:   3'- aUCCGU---AGauaGCAGGA-------UCGGUGgCG- -5'
29030 5' -54.2 NC_006146.1 + 79693 0.66 0.958219
Target:  5'- aGGGCGUCUccuaauaaguuacAUCacUCCUGccCCGCCGCa -3'
miRNA:   3'- aUCCGUAGA-------------UAGc-AGGAUc-GGUGGCG- -5'
29030 5' -54.2 NC_006146.1 + 93255 0.66 0.954757
Target:  5'- aGGGCAUCca-CGaUgUAGCCGCuCGCg -3'
miRNA:   3'- aUCCGUAGauaGCaGgAUCGGUG-GCG- -5'
29030 5' -54.2 NC_006146.1 + 71287 0.66 0.954757
Target:  5'- cGGaGCAUCUAcgccUCGUgCUAcGCagagCACCGCg -3'
miRNA:   3'- aUC-CGUAGAU----AGCAgGAU-CG----GUGGCG- -5'
29030 5' -54.2 NC_006146.1 + 115826 0.66 0.950688
Target:  5'- gAGG-AUCUcGUcCGUCCUGaCCACCGUc -3'
miRNA:   3'- aUCCgUAGA-UA-GCAGGAUcGGUGGCG- -5'
29030 5' -54.2 NC_006146.1 + 57886 0.66 0.950688
Target:  5'- cGGGCGUCUgcuccAUCG-CCUcaaGGCCGaguCCGUc -3'
miRNA:   3'- aUCCGUAGA-----UAGCaGGA---UCGGU---GGCG- -5'
29030 5' -54.2 NC_006146.1 + 138896 0.66 0.950688
Target:  5'- gAGGCcccUCUGUCcUCCUAGCguguCGCCuGCc -3'
miRNA:   3'- aUCCGu--AGAUAGcAGGAUCG----GUGG-CG- -5'
29030 5' -54.2 NC_006146.1 + 52450 0.66 0.946382
Target:  5'- cUGGGCcaccc-CGUUgUAGCCGCCGUg -3'
miRNA:   3'- -AUCCGuagauaGCAGgAUCGGUGGCG- -5'
29030 5' -54.2 NC_006146.1 + 166025 0.66 0.946382
Target:  5'- gUGGGCAUCgGggGUgCCUguGGCCcCCGCc -3'
miRNA:   3'- -AUCCGUAGaUagCA-GGA--UCGGuGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.