miRNA display CGI


Results 1 - 20 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29031 3' -61.9 NC_006146.1 + 3626 0.66 0.717619
Target:  5'- cCGCCggccauccccacgcGCGGcCCCGggcccUCCCCgacauCCAGGGa -3'
miRNA:   3'- -GCGGa-------------CGUC-GGGCaa---AGGGG-----GGUCCC- -5'
29031 3' -61.9 NC_006146.1 + 2694 0.66 0.717619
Target:  5'- cCGCCggccauccccacgcGCGGcCCCGggcccUCCCCgacauCCAGGGa -3'
miRNA:   3'- -GCGGa-------------CGUC-GGGCaa---AGGGG-----GGUCCC- -5'
29031 3' -61.9 NC_006146.1 + 1762 0.66 0.717619
Target:  5'- cCGCCggccauccccacgcGCGGcCCCGggcccUCCCCgacauCCAGGGa -3'
miRNA:   3'- -GCGGa-------------CGUC-GGGCaa---AGGGG-----GGUCCC- -5'
29031 3' -61.9 NC_006146.1 + 830 0.66 0.717619
Target:  5'- cCGCCggccauccccacgcGCGGcCCCGggcccUCCCCgacauCCAGGGa -3'
miRNA:   3'- -GCGGa-------------CGUC-GGGCaa---AGGGG-----GGUCCC- -5'
29031 3' -61.9 NC_006146.1 + 115247 0.66 0.704336
Target:  5'- aCGCC-GCcuGGCuCCGgcugcugcaCCCCUCGGGGg -3'
miRNA:   3'- -GCGGaCG--UCG-GGCaaa------GGGGGGUCCC- -5'
29031 3' -61.9 NC_006146.1 + 158037 0.66 0.704336
Target:  5'- gGCCUGCccAGCCacccaGccUCgCCCCAGGc -3'
miRNA:   3'- gCGGACG--UCGGg----CaaAGgGGGGUCCc -5'
29031 3' -61.9 NC_006146.1 + 8867 0.66 0.69478
Target:  5'- aGCCUGCc-CCCG----CCCCCAGGc -3'
miRNA:   3'- gCGGACGucGGGCaaagGGGGGUCCc -5'
29031 3' -61.9 NC_006146.1 + 129257 0.66 0.69478
Target:  5'- gGCCUcGC-GCCacagguaaaaGUUaaCCCCCAGGGu -3'
miRNA:   3'- gCGGA-CGuCGGg---------CAAagGGGGGUCCC- -5'
29031 3' -61.9 NC_006146.1 + 60027 0.66 0.69478
Target:  5'- cCGCCUGCgcccgAGCCCGagacgcagcgUCCCUCUgaucGGGc -3'
miRNA:   3'- -GCGGACG-----UCGGGCaa--------AGGGGGGu---CCC- -5'
29031 3' -61.9 NC_006146.1 + 144023 0.66 0.69478
Target:  5'- aGCCaaccaUAGaCCCGUUUCCUgggUCCAGGGc -3'
miRNA:   3'- gCGGac---GUC-GGGCAAAGGG---GGGUCCC- -5'
29031 3' -61.9 NC_006146.1 + 147101 0.66 0.69478
Target:  5'- aGCCaaccaUAGaCCCGUUUCCUgggUCCAGGGc -3'
miRNA:   3'- gCGGac---GUC-GGGCAAAGGG---GGGUCCC- -5'
29031 3' -61.9 NC_006146.1 + 156335 0.66 0.69478
Target:  5'- aGCCaaccaUAGaCCCGUUUCCUgggUCCAGGGc -3'
miRNA:   3'- gCGGac---GUC-GGGCAAAGGG---GGGUCCC- -5'
29031 3' -61.9 NC_006146.1 + 127236 0.66 0.69478
Target:  5'- gGCCUGgAGCgaaugcgagCCGggccccUCUCCCCAGGcGg -3'
miRNA:   3'- gCGGACgUCG---------GGCaa----AGGGGGGUCC-C- -5'
29031 3' -61.9 NC_006146.1 + 153257 0.66 0.69478
Target:  5'- aGCCaaccaUAGaCCCGUUUCCUgggUCCAGGGc -3'
miRNA:   3'- gCGGac---GUC-GGGCAAAGGG---GGGUCCC- -5'
29031 3' -61.9 NC_006146.1 + 150179 0.66 0.69478
Target:  5'- aGCCaaccaUAGaCCCGUUUCCUgggUCCAGGGc -3'
miRNA:   3'- gCGGac---GUC-GGGCAAAGGG---GGGUCCC- -5'
29031 3' -61.9 NC_006146.1 + 149453 0.66 0.690944
Target:  5'- aGCUUGCGGCucagcuCCGUggagaagcagagcUCCCCCaUGGGGa -3'
miRNA:   3'- gCGGACGUCG------GGCAa------------AGGGGG-GUCCC- -5'
29031 3' -61.9 NC_006146.1 + 115348 0.66 0.686139
Target:  5'- uCGCaggaaacuacacagGCAGCgCG--UCCCCUCGGGGa -3'
miRNA:   3'- -GCGga------------CGUCGgGCaaAGGGGGGUCCC- -5'
29031 3' -61.9 NC_006146.1 + 50151 0.66 0.685177
Target:  5'- cCGCCaGC-GCUCGUcgUCCaggaCCAGGGg -3'
miRNA:   3'- -GCGGaCGuCGGGCAa-AGGgg--GGUCCC- -5'
29031 3' -61.9 NC_006146.1 + 59762 0.66 0.685177
Target:  5'- gGCCaGCcGCCCGg--CCaCCUGGGGg -3'
miRNA:   3'- gCGGaCGuCGGGCaaaGGgGGGUCCC- -5'
29031 3' -61.9 NC_006146.1 + 137704 0.66 0.685177
Target:  5'- -cCCUcCGGCC----UCCCCCCGGGGu -3'
miRNA:   3'- gcGGAcGUCGGgcaaAGGGGGGUCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.