Results 1 - 20 of 147 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29031 | 3' | -61.9 | NC_006146.1 | + | 69231 | 0.98 | 0.00581 |
Target: 5'- cCGCCcGUAGCCCGUUUCCCCCCAGGGc -3' miRNA: 3'- -GCGGaCGUCGGGCAAAGGGGGGUCCC- -5' |
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29031 | 3' | -61.9 | NC_006146.1 | + | 47293 | 0.77 | 0.187068 |
Target: 5'- aCGuCCUGCAGCCgGgacUCCUCCCGGGc -3' miRNA: 3'- -GC-GGACGUCGGgCaa-AGGGGGGUCCc -5' |
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29031 | 3' | -61.9 | NC_006146.1 | + | 30290 | 0.76 | 0.205642 |
Target: 5'- -aUCUGCAGCCCuuuucugcaGUUUCCCCuuCCAGGGc -3' miRNA: 3'- gcGGACGUCGGG---------CAAAGGGG--GGUCCC- -5' |
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29031 | 3' | -61.9 | NC_006146.1 | + | 13062 | 0.75 | 0.241983 |
Target: 5'- gCGCUcGguGCCCGUc-CCCUCCGGGGc -3' miRNA: 3'- -GCGGaCguCGGGCAaaGGGGGGUCCC- -5' |
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29031 | 3' | -61.9 | NC_006146.1 | + | 156793 | 0.74 | 0.259129 |
Target: 5'- cCGCCaGCAGCCCcgacaUCCCgCCCuGGGg -3' miRNA: 3'- -GCGGaCGUCGGGcaa--AGGG-GGGuCCC- -5' |
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29031 | 3' | -61.9 | NC_006146.1 | + | 74080 | 0.74 | 0.265061 |
Target: 5'- -aCCUGCccGCCCG--UCCCCaCCAGGGa -3' miRNA: 3'- gcGGACGu-CGGGCaaAGGGG-GGUCCC- -5' |
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29031 | 3' | -61.9 | NC_006146.1 | + | 99023 | 0.74 | 0.283517 |
Target: 5'- cCGCgUGaCGGCCgUGUagaggCCCCCCAGGGc -3' miRNA: 3'- -GCGgAC-GUCGG-GCAaa---GGGGGGUCCC- -5' |
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29031 | 3' | -61.9 | NC_006146.1 | + | 137883 | 0.73 | 0.296377 |
Target: 5'- aCGCCU--AGCCCGcUUUaaccaUCCCCCGGGGg -3' miRNA: 3'- -GCGGAcgUCGGGC-AAA-----GGGGGGUCCC- -5' |
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29031 | 3' | -61.9 | NC_006146.1 | + | 167884 | 0.73 | 0.309685 |
Target: 5'- aGCCccgggGCGGCCCGgggaCCCUCgCGGGGg -3' miRNA: 3'- gCGGa----CGUCGGGCaaa-GGGGG-GUCCC- -5' |
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29031 | 3' | -61.9 | NC_006146.1 | + | 168816 | 0.73 | 0.309685 |
Target: 5'- aGCCccgggGCGGCCCGgggaCCCUCgCGGGGg -3' miRNA: 3'- gCGGa----CGUCGGGCaaa-GGGGG-GUCCC- -5' |
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29031 | 3' | -61.9 | NC_006146.1 | + | 169748 | 0.73 | 0.309685 |
Target: 5'- aGCCccgggGCGGCCCGgggaCCCUCgCGGGGg -3' miRNA: 3'- gCGGa----CGUCGGGCaaa-GGGGG-GUCCC- -5' |
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29031 | 3' | -61.9 | NC_006146.1 | + | 43055 | 0.73 | 0.309685 |
Target: 5'- aCGCCgGCuGCCCaagcccaCCCUCCAGGGg -3' miRNA: 3'- -GCGGaCGuCGGGcaaa---GGGGGGUCCC- -5' |
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29031 | 3' | -61.9 | NC_006146.1 | + | 146209 | 0.73 | 0.316509 |
Target: 5'- gGCCUGUAGCCCGUgaCUCUggaggaCGGGGa -3' miRNA: 3'- gCGGACGUCGGGCAaaGGGGg-----GUCCC- -5' |
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29031 | 3' | -61.9 | NC_006146.1 | + | 158522 | 0.73 | 0.316509 |
Target: 5'- gGCCUGUAGCCCGUgaCUCUggaggaCGGGGa -3' miRNA: 3'- gCGGACGUCGGGCAaaGGGGg-----GUCCC- -5' |
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29031 | 3' | -61.9 | NC_006146.1 | + | 143131 | 0.73 | 0.316509 |
Target: 5'- gGCCUGUAGCCCGUgaCUCUggaggaCGGGGa -3' miRNA: 3'- gCGGACGUCGGGCAaaGGGGg-----GUCCC- -5' |
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29031 | 3' | -61.9 | NC_006146.1 | + | 149287 | 0.73 | 0.316509 |
Target: 5'- gGCCUGUAGCCCGUgaCUCUggaggaCGGGGa -3' miRNA: 3'- gCGGACGUCGGGCAaaGGGGg-----GUCCC- -5' |
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29031 | 3' | -61.9 | NC_006146.1 | + | 155443 | 0.73 | 0.316509 |
Target: 5'- gGCCUGUAGCCCGUgaCUCUggaggaCGGGGa -3' miRNA: 3'- gCGGACGUCGGGCAaaGGGGg-----GUCCC- -5' |
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29031 | 3' | -61.9 | NC_006146.1 | + | 152365 | 0.73 | 0.316509 |
Target: 5'- gGCCUGUAGCCCGUgaCUCUggaggaCGGGGa -3' miRNA: 3'- gCGGACGUCGGGCAaaGGGGg-----GUCCC- -5' |
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29031 | 3' | -61.9 | NC_006146.1 | + | 155327 | 0.73 | 0.330493 |
Target: 5'- uCGCCgacGC-GCCUG--UCCUCCCAGGGa -3' miRNA: 3'- -GCGGa--CGuCGGGCaaAGGGGGGUCCC- -5' |
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29031 | 3' | -61.9 | NC_006146.1 | + | 43322 | 0.72 | 0.337654 |
Target: 5'- gGCCggcGCGGCCuCGg--CCgCCCAGGGc -3' miRNA: 3'- gCGGa--CGUCGG-GCaaaGGgGGGUCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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