miRNA display CGI


Results 1 - 20 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29031 3' -61.9 NC_006146.1 + 69231 0.98 0.00581
Target:  5'- cCGCCcGUAGCCCGUUUCCCCCCAGGGc -3'
miRNA:   3'- -GCGGaCGUCGGGCAAAGGGGGGUCCC- -5'
29031 3' -61.9 NC_006146.1 + 20449 0.7 0.46688
Target:  5'- aGCCccgUGUccacuGCCCagUUCCCCCCAGGa -3'
miRNA:   3'- gCGG---ACGu----CGGGcaAAGGGGGGUCCc -5'
29031 3' -61.9 NC_006146.1 + 26605 0.7 0.46688
Target:  5'- aGCCccgUGUccacuGCCCagUUCCCCCCAGGa -3'
miRNA:   3'- gCGG---ACGu----CGGGcaAAGGGGGGUCCc -5'
29031 3' -61.9 NC_006146.1 + 60027 0.66 0.69478
Target:  5'- cCGCCUGCgcccgAGCCCGagacgcagcgUCCCUCUgaucGGGc -3'
miRNA:   3'- -GCGGACG-----UCGGGCaa--------AGGGGGGu---CCC- -5'
29031 3' -61.9 NC_006146.1 + 99023 0.74 0.283517
Target:  5'- cCGCgUGaCGGCCgUGUagaggCCCCCCAGGGc -3'
miRNA:   3'- -GCGgAC-GUCGG-GCAaa---GGGGGGUCCC- -5'
29031 3' -61.9 NC_006146.1 + 167884 0.73 0.309685
Target:  5'- aGCCccgggGCGGCCCGgggaCCCUCgCGGGGg -3'
miRNA:   3'- gCGGa----CGUCGGGCaaa-GGGGG-GUCCC- -5'
29031 3' -61.9 NC_006146.1 + 169748 0.73 0.309685
Target:  5'- aGCCccgggGCGGCCCGgggaCCCUCgCGGGGg -3'
miRNA:   3'- gCGGa----CGUCGGGCaaa-GGGGG-GUCCC- -5'
29031 3' -61.9 NC_006146.1 + 43055 0.73 0.309685
Target:  5'- aCGCCgGCuGCCCaagcccaCCCUCCAGGGg -3'
miRNA:   3'- -GCGGaCGuCGGGcaaa---GGGGGGUCCC- -5'
29031 3' -61.9 NC_006146.1 + 146853 0.72 0.367417
Target:  5'- gGCCUgGCucggGGCCgCGUcaCCCCgCCAGGGg -3'
miRNA:   3'- gCGGA-CG----UCGG-GCAaaGGGG-GGUCCC- -5'
29031 3' -61.9 NC_006146.1 + 17371 0.7 0.46688
Target:  5'- aGCCccgUGUccacuGCCCagUUCCCCCCAGGa -3'
miRNA:   3'- gCGG---ACGu----CGGGcaAAGGGGGGUCCc -5'
29031 3' -61.9 NC_006146.1 + 16926 0.7 0.428736
Target:  5'- gGCCggagggaccccgGCGGCCCGgugugccagcgUCCCCCCAGc- -3'
miRNA:   3'- gCGGa-----------CGUCGGGCaa---------AGGGGGGUCcc -5'
29031 3' -61.9 NC_006146.1 + 43322 0.72 0.337654
Target:  5'- gGCCggcGCGGCCuCGg--CCgCCCAGGGc -3'
miRNA:   3'- gCGGa--CGUCGG-GCaaaGGgGGGUCCC- -5'
29031 3' -61.9 NC_006146.1 + 47293 0.77 0.187068
Target:  5'- aCGuCCUGCAGCCgGgacUCCUCCCGGGc -3'
miRNA:   3'- -GC-GGACGUCGGgCaa-AGGGGGGUCCc -5'
29031 3' -61.9 NC_006146.1 + 160217 0.7 0.432128
Target:  5'- uGCCUGCAugauGCCCGcggguaUCgCCCCGGGc -3'
miRNA:   3'- gCGGACGU----CGGGCaa----AGgGGGGUCCc -5'
29031 3' -61.9 NC_006146.1 + 30290 0.76 0.205642
Target:  5'- -aUCUGCAGCCCuuuucugcaGUUUCCCCuuCCAGGGc -3'
miRNA:   3'- gcGGACGUCGGG---------CAAAGGGG--GGUCCC- -5'
29031 3' -61.9 NC_006146.1 + 155327 0.73 0.330493
Target:  5'- uCGCCgacGC-GCCUG--UCCUCCCAGGGa -3'
miRNA:   3'- -GCGGa--CGuCGGGCaaAGGGGGGUCCC- -5'
29031 3' -61.9 NC_006146.1 + 14293 0.7 0.46688
Target:  5'- aGCCccgUGUccacuGCCCagUUCCCCCCAGGa -3'
miRNA:   3'- gCGG---ACGu----CGGGcaAAGGGGGGUCCc -5'
29031 3' -61.9 NC_006146.1 + 23527 0.7 0.46688
Target:  5'- aGCCccgUGUccacuGCCCagUUCCCCCCAGGa -3'
miRNA:   3'- gCGG---ACGu----CGGGcaAAGGGGGGUCCc -5'
29031 3' -61.9 NC_006146.1 + 156793 0.74 0.259129
Target:  5'- cCGCCaGCAGCCCcgacaUCCCgCCCuGGGg -3'
miRNA:   3'- -GCGGaCGUCGGGcaa--AGGG-GGGuCCC- -5'
29031 3' -61.9 NC_006146.1 + 168816 0.73 0.309685
Target:  5'- aGCCccgggGCGGCCCGgggaCCCUCgCGGGGg -3'
miRNA:   3'- gCGGa----CGUCGGGCaaa-GGGGG-GUCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.