miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29031 5' -56.8 NC_006146.1 + 104674 0.66 0.90228
Target:  5'- -gCCUgCgccgCGAuagAGggGCAGCUGGgCCu -3'
miRNA:   3'- caGGAgGa---GCU---UCuaCGUCGACCgGG- -5'
29031 5' -56.8 NC_006146.1 + 52395 0.66 0.90228
Target:  5'- cGUCCgUCUCGAuGAUGa---UGGCCCc -3'
miRNA:   3'- -CAGGaGGAGCUuCUACgucgACCGGG- -5'
29031 5' -56.8 NC_006146.1 + 125874 0.66 0.90228
Target:  5'- -cCCUCCUCGAAGGccuucugGUaaacaaAGCUccGGCUCg -3'
miRNA:   3'- caGGAGGAGCUUCUa------CG------UCGA--CCGGG- -5'
29031 5' -56.8 NC_006146.1 + 118228 0.66 0.90228
Target:  5'- -aCCaUCUCGGAGAgGCGGCUGcGCa- -3'
miRNA:   3'- caGGaGGAGCUUCUaCGUCGAC-CGgg -5'
29031 5' -56.8 NC_006146.1 + 11658 0.66 0.895886
Target:  5'- aUCCUCauugCGggGuccucgccAUGCGGCcaaguaGGCCCa -3'
miRNA:   3'- cAGGAGga--GCuuC--------UACGUCGa-----CCGGG- -5'
29031 5' -56.8 NC_006146.1 + 159882 0.66 0.895886
Target:  5'- -gUCUCCUCGcAGAggGCcucgaGGCcggGGCCCu -3'
miRNA:   3'- caGGAGGAGCuUCUa-CG-----UCGa--CCGGG- -5'
29031 5' -56.8 NC_006146.1 + 131203 0.66 0.895886
Target:  5'- -gCCUCUgccucCGGAGcgGCGcuGCaGGCCCa -3'
miRNA:   3'- caGGAGGa----GCUUCuaCGU--CGaCCGGG- -5'
29031 5' -56.8 NC_006146.1 + 128492 0.66 0.895886
Target:  5'- cGUCUcgCCuUCGAGGAcgGCgucgGGgUGGCCCu -3'
miRNA:   3'- -CAGGa-GG-AGCUUCUa-CG----UCgACCGGG- -5'
29031 5' -56.8 NC_006146.1 + 97236 0.66 0.895886
Target:  5'- cUCCagCUgGggGAcacaagGUGGCUGGCUCg -3'
miRNA:   3'- cAGGagGAgCuuCUa-----CGUCGACCGGG- -5'
29031 5' -56.8 NC_006146.1 + 89720 0.66 0.889265
Target:  5'- gGUCCgggCCUUGAauccagaccAGGUGguGCaucgGGCuCCg -3'
miRNA:   3'- -CAGGa--GGAGCU---------UCUACguCGa---CCG-GG- -5'
29031 5' -56.8 NC_006146.1 + 159649 0.66 0.889265
Target:  5'- -aCCUCCUUGucguacagcGGGAcccuaaagcUGCAGaUGGCCCc -3'
miRNA:   3'- caGGAGGAGC---------UUCU---------ACGUCgACCGGG- -5'
29031 5' -56.8 NC_006146.1 + 122639 0.66 0.889265
Target:  5'- -cCCUCUuUCGcgccAGGAcgGCGGCgggGGCCCu -3'
miRNA:   3'- caGGAGG-AGC----UUCUa-CGUCGa--CCGGG- -5'
29031 5' -56.8 NC_006146.1 + 66418 0.66 0.88242
Target:  5'- uGUCCUCCUCuuccgggugacaGAcaaAGAgccGCAGCUG-CCUg -3'
miRNA:   3'- -CAGGAGGAG------------CU---UCUa--CGUCGACcGGG- -5'
29031 5' -56.8 NC_006146.1 + 168016 0.66 0.88242
Target:  5'- cUCCUCCUCuAAGAgUGguGUcgacGGUCCg -3'
miRNA:   3'- cAGGAGGAGcUUCU-ACguCGa---CCGGG- -5'
29031 5' -56.8 NC_006146.1 + 49893 0.66 0.875356
Target:  5'- gGUCCUCCgguaGGAGAgGUAGUcggaGGCCg -3'
miRNA:   3'- -CAGGAGGag--CUUCUaCGUCGa---CCGGg -5'
29031 5' -56.8 NC_006146.1 + 42252 0.66 0.875356
Target:  5'- -cCCUCCggcgCGAGGA----GCUGGCUCa -3'
miRNA:   3'- caGGAGGa---GCUUCUacguCGACCGGG- -5'
29031 5' -56.8 NC_006146.1 + 42316 0.66 0.875356
Target:  5'- aGUgC-CCUgCGAGGuUGCuGaCUGGCCCg -3'
miRNA:   3'- -CAgGaGGA-GCUUCuACGuC-GACCGGG- -5'
29031 5' -56.8 NC_006146.1 + 37177 0.66 0.875356
Target:  5'- aGUCCUugCUUUGAauguggcccGGGUGggcaaUGGCUGGCCCa -3'
miRNA:   3'- -CAGGA--GGAGCU---------UCUAC-----GUCGACCGGG- -5'
29031 5' -56.8 NC_006146.1 + 43210 0.66 0.875356
Target:  5'- aGUCCUgCUaCGAGGAguacgUGCAGC-GGaCCUu -3'
miRNA:   3'- -CAGGAgGA-GCUUCU-----ACGUCGaCC-GGG- -5'
29031 5' -56.8 NC_006146.1 + 19274 0.66 0.868077
Target:  5'- gGUCCggCCUCuccuGggGCAGCaGGCUCa -3'
miRNA:   3'- -CAGGa-GGAGcuu-CuaCGUCGaCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.