miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29032 3' -54.1 NC_006146.1 + 124984 0.66 0.963835
Target:  5'- uCCACCUacgGCACGGUcaccGGCCGGGc-- -3'
miRNA:   3'- cGGUGGA---CGUGCCGaa--UUGGUCCuac -5'
29032 3' -54.1 NC_006146.1 + 17572 0.66 0.963835
Target:  5'- cGCCGCCagaucaaucggaUGCugGGCgaccUGGCCcGGGc- -3'
miRNA:   3'- -CGGUGG------------ACGugCCGa---AUUGGuCCUac -5'
29032 3' -54.1 NC_006146.1 + 162386 0.66 0.963835
Target:  5'- gGCgCGCCcGCGCccgggaccccGGUgg-GCCAGGAUGg -3'
miRNA:   3'- -CG-GUGGaCGUG----------CCGaauUGGUCCUAC- -5'
29032 3' -54.1 NC_006146.1 + 96950 0.66 0.963835
Target:  5'- uCCGCgaGuCugGGC---GCCAGGGUGu -3'
miRNA:   3'- cGGUGgaC-GugCCGaauUGGUCCUAC- -5'
29032 3' -54.1 NC_006146.1 + 56985 0.66 0.961767
Target:  5'- gGCCACCUGCugGuuaagauagaaggggGCcaUGGCCgAGGAg- -3'
miRNA:   3'- -CGGUGGACGugC---------------CGa-AUUGG-UCCUac -5'
29032 3' -54.1 NC_006146.1 + 21257 0.66 0.960344
Target:  5'- cGCUGCCgGCGCGuGCUcGACCuGGugcUGg -3'
miRNA:   3'- -CGGUGGaCGUGC-CGAaUUGGuCCu--AC- -5'
29032 3' -54.1 NC_006146.1 + 123248 0.66 0.960344
Target:  5'- gGCCGCCgcGCugGGCcgGGCCGcGGc-- -3'
miRNA:   3'- -CGGUGGa-CGugCCGaaUUGGU-CCuac -5'
29032 3' -54.1 NC_006146.1 + 110461 0.66 0.960344
Target:  5'- uUCACCaGCuucuCGGCcaUGGCCAGGAa- -3'
miRNA:   3'- cGGUGGaCGu---GCCGa-AUUGGUCCUac -5'
29032 3' -54.1 NC_006146.1 + 55121 0.66 0.960344
Target:  5'- gGCCACCUGCucguacuCGGCcu--CCGGuGggGg -3'
miRNA:   3'- -CGGUGGACGu------GCCGaauuGGUC-CuaC- -5'
29032 3' -54.1 NC_006146.1 + 128138 0.66 0.960344
Target:  5'- cGCCGCCUGCAccuguCGGCccugcuGCCgcaGGcGAUGc -3'
miRNA:   3'- -CGGUGGACGU-----GCCGaau---UGG---UC-CUAC- -5'
29032 3' -54.1 NC_006146.1 + 55368 0.66 0.960344
Target:  5'- cGCCACCgcGCGCGGgacgcCCGGGGc- -3'
miRNA:   3'- -CGGUGGa-CGUGCCgaauuGGUCCUac -5'
29032 3' -54.1 NC_006146.1 + 53794 0.66 0.956627
Target:  5'- gGCCucgGCCcGCGCGGCguccaUAGCgGGGGg- -3'
miRNA:   3'- -CGG---UGGaCGUGCCGa----AUUGgUCCUac -5'
29032 3' -54.1 NC_006146.1 + 121345 0.66 0.956627
Target:  5'- gGCCA--UGCugGGCcUGGCCGGcGUGg -3'
miRNA:   3'- -CGGUggACGugCCGaAUUGGUCcUAC- -5'
29032 3' -54.1 NC_006146.1 + 140574 0.66 0.956627
Target:  5'- uGCCACC-GCGUGGCaacACUAGGAa- -3'
miRNA:   3'- -CGGUGGaCGUGCCGaauUGGUCCUac -5'
29032 3' -54.1 NC_006146.1 + 20414 0.66 0.952679
Target:  5'- cGCCuCCgacagGgACGGCU--ACCAGGGg- -3'
miRNA:   3'- -CGGuGGa----CgUGCCGAauUGGUCCUac -5'
29032 3' -54.1 NC_006146.1 + 54027 0.66 0.948497
Target:  5'- gGCaCugCUGCGCcuGGCcgGGCC-GGAUGu -3'
miRNA:   3'- -CG-GugGACGUG--CCGaaUUGGuCCUAC- -5'
29032 3' -54.1 NC_006146.1 + 77548 0.66 0.948497
Target:  5'- gGCCACgUGUACGuggcGCUgu-CCAGGGc- -3'
miRNA:   3'- -CGGUGgACGUGC----CGAauuGGUCCUac -5'
29032 3' -54.1 NC_006146.1 + 59909 0.66 0.948497
Target:  5'- gGCCaACCUGCuggugcGCGGCUacgAGCUGGGucUGa -3'
miRNA:   3'- -CGG-UGGACG------UGCCGAa--UUGGUCCu-AC- -5'
29032 3' -54.1 NC_006146.1 + 43423 0.67 0.939416
Target:  5'- cGCCG-CUGCAUGGCgUUGGCCGacAUGg -3'
miRNA:   3'- -CGGUgGACGUGCCG-AAUUGGUccUAC- -5'
29032 3' -54.1 NC_006146.1 + 86370 0.67 0.934512
Target:  5'- aCCACCUGcCACGGCgccuguACCGGc--- -3'
miRNA:   3'- cGGUGGAC-GUGCCGaau---UGGUCcuac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.