miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29032 3' -54.1 NC_006146.1 + 69461 1.1 0.003854
Target:  5'- cGCCACCUGCACGGCUUAACCAGGAUGc -3'
miRNA:   3'- -CGGUGGACGUGCCGAAUUGGUCCUAC- -5'
29032 3' -54.1 NC_006146.1 + 148489 0.79 0.370382
Target:  5'- gGCCACCUGggucacCACGGUggaccccggGGCCAGGGUGg -3'
miRNA:   3'- -CGGUGGAC------GUGCCGaa-------UUGGUCCUAC- -5'
29032 3' -54.1 NC_006146.1 + 42448 0.76 0.486803
Target:  5'- cGCCGCCaGCAUGGCg--GCCGGGucGUGg -3'
miRNA:   3'- -CGGUGGaCGUGCCGaauUGGUCC--UAC- -5'
29032 3' -54.1 NC_006146.1 + 109325 0.75 0.556211
Target:  5'- aGCCugCUGCACGGCcgAGCCAa---- -3'
miRNA:   3'- -CGGugGACGUGCCGaaUUGGUccuac -5'
29032 3' -54.1 NC_006146.1 + 118438 0.74 0.595108
Target:  5'- gGCCGagguCCUGCACGGCggcuacaaCGGGGUGg -3'
miRNA:   3'- -CGGU----GGACGUGCCGaauug---GUCCUAC- -5'
29032 3' -54.1 NC_006146.1 + 150144 0.73 0.659233
Target:  5'- gGCCAgCUGCu--GCUUGuCCAGGAUGg -3'
miRNA:   3'- -CGGUgGACGugcCGAAUuGGUCCUAC- -5'
29032 3' -54.1 NC_006146.1 + 61812 0.73 0.690077
Target:  5'- gGCgCGCCgGCACGGCacGGgCGGGGUGa -3'
miRNA:   3'- -CG-GUGGaCGUGCCGaaUUgGUCCUAC- -5'
29032 3' -54.1 NC_006146.1 + 119494 0.72 0.700271
Target:  5'- aGCCACCUGCGgucGCaauuuuGCCGGGAUGc -3'
miRNA:   3'- -CGGUGGACGUgc-CGaau---UGGUCCUAC- -5'
29032 3' -54.1 NC_006146.1 + 70143 0.72 0.710407
Target:  5'- uGCCGCCUucGCcUGGCUccUGGCCGGGGc- -3'
miRNA:   3'- -CGGUGGA--CGuGCCGA--AUUGGUCCUac -5'
29032 3' -54.1 NC_006146.1 + 61594 0.72 0.730466
Target:  5'- aGCCGgCUGCAgCGGCcgcGGCCGGGGc- -3'
miRNA:   3'- -CGGUgGACGU-GCCGaa-UUGGUCCUac -5'
29032 3' -54.1 NC_006146.1 + 47658 0.71 0.778919
Target:  5'- gGCCcgGCCcaGCGCGGCg--GCCAGGGUc -3'
miRNA:   3'- -CGG--UGGa-CGUGCCGaauUGGUCCUAc -5'
29032 3' -54.1 NC_006146.1 + 49144 0.7 0.797424
Target:  5'- aGCCACCaggcGCACGGgUU--CCAGGGUc -3'
miRNA:   3'- -CGGUGGa---CGUGCCgAAuuGGUCCUAc -5'
29032 3' -54.1 NC_006146.1 + 44069 0.7 0.824013
Target:  5'- gGgCGCCUGCAUGcCggGACUGGGGUGg -3'
miRNA:   3'- -CgGUGGACGUGCcGaaUUGGUCCUAC- -5'
29032 3' -54.1 NC_006146.1 + 98222 0.7 0.824013
Target:  5'- uCCAgggGCAUGGCgUAGCCGGGGUGc -3'
miRNA:   3'- cGGUggaCGUGCCGaAUUGGUCCUAC- -5'
29032 3' -54.1 NC_006146.1 + 165793 0.7 0.824013
Target:  5'- aGCCACggugGCACGGCc-GGCUAGGggGg -3'
miRNA:   3'- -CGGUGga--CGUGCCGaaUUGGUCCuaC- -5'
29032 3' -54.1 NC_006146.1 + 67158 0.7 0.83253
Target:  5'- gGCCGCUccugaGCGCGGCgu--CCGGGAg- -3'
miRNA:   3'- -CGGUGGa----CGUGCCGaauuGGUCCUac -5'
29032 3' -54.1 NC_006146.1 + 13310 0.7 0.83253
Target:  5'- cCCACgUGCugGGC---ACCAGGGc- -3'
miRNA:   3'- cGGUGgACGugCCGaauUGGUCCUac -5'
29032 3' -54.1 NC_006146.1 + 55511 0.7 0.84086
Target:  5'- uGCCuCCUGCACGcGagcGGCCAGGGc- -3'
miRNA:   3'- -CGGuGGACGUGC-CgaaUUGGUCCUac -5'
29032 3' -54.1 NC_006146.1 + 114993 0.69 0.848996
Target:  5'- cGCCuccuggaggaAgCUGCAUGGCUgcuCCAGGAa- -3'
miRNA:   3'- -CGG----------UgGACGUGCCGAauuGGUCCUac -5'
29032 3' -54.1 NC_006146.1 + 106643 0.69 0.856931
Target:  5'- cGCCugCUGCGgcCGGC-UggUCAGGGc- -3'
miRNA:   3'- -CGGugGACGU--GCCGaAuuGGUCCUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.