miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29032 3' -54.1 NC_006146.1 + 44265 0.67 0.934512
Target:  5'- uGCC-CCUGCG-GGCc---CCGGGGUGu -3'
miRNA:   3'- -CGGuGGACGUgCCGaauuGGUCCUAC- -5'
29032 3' -54.1 NC_006146.1 + 86370 0.67 0.934512
Target:  5'- aCCACCUGcCACGGCgccuguACCGGc--- -3'
miRNA:   3'- cGGUGGAC-GUGCCGaau---UGGUCcuac -5'
29032 3' -54.1 NC_006146.1 + 60406 0.67 0.934512
Target:  5'- -aCAUCUGCACccuccuGGaCcUGGCCGGGGUGg -3'
miRNA:   3'- cgGUGGACGUG------CC-GaAUUGGUCCUAC- -5'
29032 3' -54.1 NC_006146.1 + 43056 0.67 0.929365
Target:  5'- cGCCGCCUG-GCGGUUgagggguGCCAGcGAc- -3'
miRNA:   3'- -CGGUGGACgUGCCGAau-----UGGUC-CUac -5'
29032 3' -54.1 NC_006146.1 + 20800 0.67 0.929365
Target:  5'- -aCGCCgucUACGGCUUcACUGGGGUGg -3'
miRNA:   3'- cgGUGGac-GUGCCGAAuUGGUCCUAC- -5'
29032 3' -54.1 NC_006146.1 + 58285 0.67 0.929365
Target:  5'- gGUCugCUGCuccacgcccuucAUGcGCUUcGCCGGGGUGg -3'
miRNA:   3'- -CGGugGACG------------UGC-CGAAuUGGUCCUAC- -5'
29032 3' -54.1 NC_006146.1 + 49564 0.67 0.926158
Target:  5'- gGCCAggcCCaGCAUGGCcucgauguccuCCAGGAUGa -3'
miRNA:   3'- -CGGU---GGaCGUGCCGaauu-------GGUCCUAC- -5'
29032 3' -54.1 NC_006146.1 + 158120 0.67 0.923972
Target:  5'- cGCC-CCUGCAgGGCcgcguCCAGGu-- -3'
miRNA:   3'- -CGGuGGACGUgCCGaauu-GGUCCuac -5'
29032 3' -54.1 NC_006146.1 + 87617 0.67 0.923972
Target:  5'- --uGCCUgGCGCGGUuucuUUAACCAGGuUGu -3'
miRNA:   3'- cggUGGA-CGUGCCG----AAUUGGUCCuAC- -5'
29032 3' -54.1 NC_006146.1 + 157259 0.68 0.918335
Target:  5'- cGCUGCCUGUgucCGGCgcuUGAucgucagccCCAGGGUGg -3'
miRNA:   3'- -CGGUGGACGu--GCCGa--AUU---------GGUCCUAC- -5'
29032 3' -54.1 NC_006146.1 + 71755 0.68 0.918335
Target:  5'- cGCCACCUGC-CGGUcgcuggAGCCccuguGGAg- -3'
miRNA:   3'- -CGGUGGACGuGCCGaa----UUGGu----CCUac -5'
29032 3' -54.1 NC_006146.1 + 72555 0.68 0.916596
Target:  5'- aGCCGCCaauggGCGCcggcguggugcuggGGCUU-GCCGGGGUu -3'
miRNA:   3'- -CGGUGGa----CGUG--------------CCGAAuUGGUCCUAc -5'
29032 3' -54.1 NC_006146.1 + 125331 0.68 0.912453
Target:  5'- gGCCGCCuggcUGCGCGaGCUccucgcggaGGCCAGGGc- -3'
miRNA:   3'- -CGGUGG----ACGUGC-CGAa--------UUGGUCCUac -5'
29032 3' -54.1 NC_006146.1 + 100745 0.68 0.912453
Target:  5'- gGCCACCaGCGCcccGGCcaggAGCCAGGc-- -3'
miRNA:   3'- -CGGUGGaCGUG---CCGaa--UUGGUCCuac -5'
29032 3' -54.1 NC_006146.1 + 149979 0.68 0.90633
Target:  5'- gGCCaggGCCUGCAgguCGGCcgGACuCAGGGc- -3'
miRNA:   3'- -CGG---UGGACGU---GCCGaaUUG-GUCCUac -5'
29032 3' -54.1 NC_006146.1 + 71348 0.68 0.90633
Target:  5'- uCCACCUGCugGGgU--GCCAGuGGg- -3'
miRNA:   3'- cGGUGGACGugCCgAauUGGUC-CUac -5'
29032 3' -54.1 NC_006146.1 + 55685 0.68 0.90633
Target:  5'- gGCCAgCacggGCACGGCcgccGCCGGGGg- -3'
miRNA:   3'- -CGGUgGa---CGUGCCGaau-UGGUCCUac -5'
29032 3' -54.1 NC_006146.1 + 108068 0.68 0.90633
Target:  5'- cCgGCCUGgcCACGGCg--GCCAGGGUu -3'
miRNA:   3'- cGgUGGAC--GUGCCGaauUGGUCCUAc -5'
29032 3' -54.1 NC_006146.1 + 39896 0.68 0.90633
Target:  5'- aGCgGCCUGCGgGGCgggaaacGACgAGGAg- -3'
miRNA:   3'- -CGgUGGACGUgCCGaa-----UUGgUCCUac -5'
29032 3' -54.1 NC_006146.1 + 118753 0.68 0.899965
Target:  5'- gGCCAacgGCGCGGCUUcGACCuGG-UGg -3'
miRNA:   3'- -CGGUggaCGUGCCGAA-UUGGuCCuAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.