miRNA display CGI


Results 1 - 20 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29032 5' -57 NC_006146.1 + 127405 0.66 0.897039
Target:  5'- gGCUGGGCCCcGCC-GCCGGAGccgguGUCa- -3'
miRNA:   3'- -CGGUCCGGGcUGGaCGGUUUC-----UAGca -5'
29032 5' -57 NC_006146.1 + 74561 0.66 0.897039
Target:  5'- -aCAGGCgcugcaCCGGgCUGUCGAAGGUCa- -3'
miRNA:   3'- cgGUCCG------GGCUgGACGGUUUCUAGca -5'
29032 5' -57 NC_006146.1 + 78647 0.66 0.897039
Target:  5'- gGCCGGGCCCGcCCcccagcagcaGCCAcAGGcCGg -3'
miRNA:   3'- -CGGUCCGGGCuGGa---------CGGUuUCUaGCa -5'
29032 5' -57 NC_006146.1 + 124782 0.66 0.890491
Target:  5'- gGCCAGgGCCCGggcauGCCUGCUGcuGcUCGc -3'
miRNA:   3'- -CGGUC-CGGGC-----UGGACGGUuuCuAGCa -5'
29032 5' -57 NC_006146.1 + 111650 0.66 0.890491
Target:  5'- gGCCAGGCCCugaacacccaGGCCcauggagGCCAugucccuGGAgUCGUa -3'
miRNA:   3'- -CGGUCCGGG----------CUGGa------CGGUu------UCU-AGCA- -5'
29032 5' -57 NC_006146.1 + 73028 0.66 0.890491
Target:  5'- gGCuCAGGCCCucguuCCacgGCCcGGGGUCGg -3'
miRNA:   3'- -CG-GUCCGGGcu---GGa--CGGuUUCUAGCa -5'
29032 5' -57 NC_006146.1 + 15043 0.66 0.890491
Target:  5'- gGCCAgGGCCCGccggGCCUG-CGAGGAggcacuggCGg -3'
miRNA:   3'- -CGGU-CCGGGC----UGGACgGUUUCUa-------GCa -5'
29032 5' -57 NC_006146.1 + 117581 0.66 0.883721
Target:  5'- cGCCGGGCCUccucgggcucgGACUccgGCCAGGGAg--- -3'
miRNA:   3'- -CGGUCCGGG-----------CUGGa--CGGUUUCUagca -5'
29032 5' -57 NC_006146.1 + 159561 0.66 0.879554
Target:  5'- cGCCAGGCCCGugUacagcgucucgugcaUGCagcugcuGAGGUCc- -3'
miRNA:   3'- -CGGUCCGGGCugG---------------ACGgu-----UUCUAGca -5'
29032 5' -57 NC_006146.1 + 24274 0.66 0.876733
Target:  5'- cCCAGGCCUcguGACCcugGCCGGGGGcUGg -3'
miRNA:   3'- cGGUCCGGG---CUGGa--CGGUUUCUaGCa -5'
29032 5' -57 NC_006146.1 + 88222 0.66 0.876733
Target:  5'- uGUUGGGCCUGugUuUGCuCGGGGGUCGg -3'
miRNA:   3'- -CGGUCCGGGCugG-ACG-GUUUCUAGCa -5'
29032 5' -57 NC_006146.1 + 150999 0.66 0.874595
Target:  5'- uGCCGGGCCCuguccaggacguagGGCCaGUCAAAG-UUGg -3'
miRNA:   3'- -CGGUCCGGG--------------CUGGaCGGUUUCuAGCa -5'
29032 5' -57 NC_006146.1 + 38825 0.66 0.8688
Target:  5'- aGCCAGGCCCugaGCCUGgggcagcucacguCCAGcAGcgCGUu -3'
miRNA:   3'- -CGGUCCGGGc--UGGAC-------------GGUU-UCuaGCA- -5'
29032 5' -57 NC_006146.1 + 113460 0.66 0.867331
Target:  5'- aGCCGcGGCCCGGCUUccucguaugucagcGCCAcguAGAggCGUg -3'
miRNA:   3'- -CGGU-CCGGGCUGGA--------------CGGUu--UCUa-GCA- -5'
29032 5' -57 NC_006146.1 + 40738 0.67 0.862123
Target:  5'- aGgCGGGCCCGugCUuggggcugGCCAcGGA-CGUg -3'
miRNA:   3'- -CgGUCCGGGCugGA--------CGGUuUCUaGCA- -5'
29032 5' -57 NC_006146.1 + 19333 0.67 0.862123
Target:  5'- gGCCu-GCCCGGCCUGCCcGGccUCGc -3'
miRNA:   3'- -CGGucCGGGCUGGACGGuUUcuAGCa -5'
29032 5' -57 NC_006146.1 + 28567 0.67 0.862123
Target:  5'- gGCCu-GCCCGGCCUGCCcGGccUCGc -3'
miRNA:   3'- -CGGucCGGGCUGGACGGuUUcuAGCa -5'
29032 5' -57 NC_006146.1 + 22411 0.67 0.862123
Target:  5'- gGCCu-GCCCGGCCUGCCcGGccUCGc -3'
miRNA:   3'- -CGGucCGGGCUGGACGGuUUcuAGCa -5'
29032 5' -57 NC_006146.1 + 53328 0.67 0.862123
Target:  5'- aGCCcgaggAGGCCCGGCg-GCCGcGGggCGg -3'
miRNA:   3'- -CGG-----UCCGGGCUGgaCGGUuUCuaGCa -5'
29032 5' -57 NC_006146.1 + 155562 0.67 0.862123
Target:  5'- aGCCGGGCUCGcgcggggcGCCcGCCAGGGGc--- -3'
miRNA:   3'- -CGGUCCGGGC--------UGGaCGGUUUCUagca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.