miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29033 3' -52 NC_006146.1 + 79063 0.65 0.989762
Target:  5'- uCCgcaGGCGCCGGAcgcaugcgaUGACGGCugccaacuugcgcUGGAAg -3'
miRNA:   3'- -GGaa-CCGUGGCCU---------ACUGUUGu------------ACCUU- -5'
29033 3' -52 NC_006146.1 + 64852 0.66 0.988932
Target:  5'- aCCUUcugccaGGCuccaaguCCGGAUGGgcggccacggcCAGCAUGGAc -3'
miRNA:   3'- -GGAA------CCGu------GGCCUACU-----------GUUGUACCUu -5'
29033 3' -52 NC_006146.1 + 56303 0.66 0.987435
Target:  5'- aCCcUGGCcguGCUGGAcgaaGugAGCGUGGAc -3'
miRNA:   3'- -GGaACCG---UGGCCUa---CugUUGUACCUu -5'
29033 3' -52 NC_006146.1 + 80092 0.66 0.987435
Target:  5'- ----aGCGCCuGGGUGGCGACAcUGGGu -3'
miRNA:   3'- ggaacCGUGG-CCUACUGUUGU-ACCUu -5'
29033 3' -52 NC_006146.1 + 33224 0.66 0.987435
Target:  5'- uCCggGGCAgCCGGGUGGCcGCcgGcGGGu -3'
miRNA:   3'- -GGaaCCGU-GGCCUACUGuUGuaC-CUU- -5'
29033 3' -52 NC_006146.1 + 91090 0.66 0.983975
Target:  5'- aCCUUccaGCugCGGcaGUGGCAGCGgagGGAGg -3'
miRNA:   3'- -GGAAc--CGugGCC--UACUGUUGUa--CCUU- -5'
29033 3' -52 NC_006146.1 + 46891 0.66 0.981995
Target:  5'- uCCUgGGCACCuacaacGGGUGACGGagaagGGAGa -3'
miRNA:   3'- -GGAaCCGUGG------CCUACUGUUgua--CCUU- -5'
29033 3' -52 NC_006146.1 + 56825 0.66 0.981995
Target:  5'- --aUGGUGCCGGAUGAgAuuGCccGGAu -3'
miRNA:   3'- ggaACCGUGGCCUACUgU--UGuaCCUu -5'
29033 3' -52 NC_006146.1 + 38959 0.67 0.980722
Target:  5'- gCCUUGGCAuCCGGGUGggcccccagacucucGCAGag-GGGg -3'
miRNA:   3'- -GGAACCGU-GGCCUAC---------------UGUUguaCCUu -5'
29033 3' -52 NC_006146.1 + 4505 0.67 0.974952
Target:  5'- --aUGGCACUGGcgGGcCAGCggGGGGu -3'
miRNA:   3'- ggaACCGUGGCCuaCU-GUUGuaCCUU- -5'
29033 3' -52 NC_006146.1 + 113295 0.67 0.972209
Target:  5'- aCCUUGGCccccACCGG--GACAAaaGUGGGAa -3'
miRNA:   3'- -GGAACCG----UGGCCuaCUGUUg-UACCUU- -5'
29033 3' -52 NC_006146.1 + 70498 0.68 0.965757
Target:  5'- gCCUucUGGCAaggGGAUGGCugaaaugAGCGUGGAGg -3'
miRNA:   3'- -GGA--ACCGUgg-CCUACUG-------UUGUACCUU- -5'
29033 3' -52 NC_006146.1 + 161727 0.68 0.962693
Target:  5'- gCUUGGgGgUGGGUGGCAcgGUGGGAg -3'
miRNA:   3'- gGAACCgUgGCCUACUGUugUACCUU- -5'
29033 3' -52 NC_006146.1 + 97426 0.68 0.95907
Target:  5'- aCUUGGaCACCGGAgGugGA--UGGAAc -3'
miRNA:   3'- gGAACC-GUGGCCUaCugUUguACCUU- -5'
29033 3' -52 NC_006146.1 + 87360 0.68 0.95907
Target:  5'- --aUGGgACUGGAUGACAAgcUGUGGGc -3'
miRNA:   3'- ggaACCgUGGCCUACUGUU--GUACCUu -5'
29033 3' -52 NC_006146.1 + 141 0.68 0.95907
Target:  5'- --aUGGCGCCuGGAUGGCugccCGUGGu- -3'
miRNA:   3'- ggaACCGUGG-CCUACUGuu--GUACCuu -5'
29033 3' -52 NC_006146.1 + 54038 0.69 0.946776
Target:  5'- gCC-UGGCcggGCCGGAUGugGuggaggacgagaGCGUGGGu -3'
miRNA:   3'- -GGaACCG---UGGCCUACugU------------UGUACCUu -5'
29033 3' -52 NC_006146.1 + 141475 0.69 0.932267
Target:  5'- gCC-UGGcCugCGGggGACAGgGUGGAc -3'
miRNA:   3'- -GGaACC-GugGCCuaCUGUUgUACCUu -5'
29033 3' -52 NC_006146.1 + 144553 0.69 0.932267
Target:  5'- gCC-UGGcCugCGGggGACAGgGUGGAc -3'
miRNA:   3'- -GGaACC-GugGCCuaCUGUUgUACCUu -5'
29033 3' -52 NC_006146.1 + 156864 0.69 0.932267
Target:  5'- gCC-UGGcCugCGGggGACAGgGUGGAc -3'
miRNA:   3'- -GGaACC-GugGCCuaCUGUUgUACCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.