Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29033 | 3' | -52 | NC_006146.1 | + | 73440 | 1.09 | 0.00743 |
Target: 5'- cCCUUGGCACCGGAUGACAACAUGGAAg -3' miRNA: 3'- -GGAACCGUGGCCUACUGUUGUACCUU- -5' |
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29033 | 3' | -52 | NC_006146.1 | + | 51498 | 0.77 | 0.544004 |
Target: 5'- ---aGGUACCGGAUGAUcaggcgaAACAUGGAAg -3' miRNA: 3'- ggaaCCGUGGCCUACUG-------UUGUACCUU- -5' |
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29033 | 3' | -52 | NC_006146.1 | + | 127981 | 0.76 | 0.617864 |
Target: 5'- gCUUGGCGCCGcugcUGACAGCcgGGAc -3' miRNA: 3'- gGAACCGUGGCcu--ACUGUUGuaCCUu -5' |
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29033 | 3' | -52 | NC_006146.1 | + | 65064 | 0.74 | 0.711837 |
Target: 5'- cUCUUGGCAgcgccuCCGGAUGuCGGCcgGGGAc -3' miRNA: 3'- -GGAACCGU------GGCCUACuGUUGuaCCUU- -5' |
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29033 | 3' | -52 | NC_006146.1 | + | 13831 | 0.7 | 0.889632 |
Target: 5'- uUCUcGGUGCUGGcgGACAGCGuccUGGAAa -3' miRNA: 3'- -GGAaCCGUGGCCuaCUGUUGU---ACCUU- -5' |
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29033 | 3' | -52 | NC_006146.1 | + | 33346 | 0.7 | 0.896465 |
Target: 5'- uCCggGGCAgCCGGGUGGCcGCcgGUGGGu -3' miRNA: 3'- -GGaaCCGU-GGCCUACUGuUG--UACCUu -5' |
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29033 | 3' | -52 | NC_006146.1 | + | 141475 | 0.69 | 0.932267 |
Target: 5'- gCC-UGGcCugCGGggGACAGgGUGGAc -3' miRNA: 3'- -GGaACC-GugGCCuaCUGUUgUACCUu -5' |
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29033 | 3' | -52 | NC_006146.1 | + | 144553 | 0.69 | 0.932267 |
Target: 5'- gCC-UGGcCugCGGggGACAGgGUGGAc -3' miRNA: 3'- -GGaACC-GugGCCuaCUGUUgUACCUu -5' |
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29033 | 3' | -52 | NC_006146.1 | + | 150708 | 0.69 | 0.932267 |
Target: 5'- gCC-UGGcCugCGGggGACAGgGUGGAc -3' miRNA: 3'- -GGaACC-GugGCCuaCUGUUgUACCUu -5' |
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29033 | 3' | -52 | NC_006146.1 | + | 153786 | 0.69 | 0.932267 |
Target: 5'- gCC-UGGcCugCGGggGACAGgGUGGAc -3' miRNA: 3'- -GGaACC-GugGCCuaCUGUUgUACCUu -5' |
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29033 | 3' | -52 | NC_006146.1 | + | 156864 | 0.69 | 0.932267 |
Target: 5'- gCC-UGGcCugCGGggGACAGgGUGGAc -3' miRNA: 3'- -GGaACC-GugGCCuaCUGUUgUACCUu -5' |
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29033 | 3' | -52 | NC_006146.1 | + | 147631 | 0.69 | 0.932267 |
Target: 5'- gCC-UGGcCugCGGggGACAGgGUGGAc -3' miRNA: 3'- -GGaACC-GugGCCuaCUGUUgUACCUu -5' |
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29033 | 3' | -52 | NC_006146.1 | + | 54038 | 0.69 | 0.946776 |
Target: 5'- gCC-UGGCcggGCCGGAUGugGuggaggacgagaGCGUGGGu -3' miRNA: 3'- -GGaACCG---UGGCCUACugU------------UGUACCUu -5' |
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29033 | 3' | -52 | NC_006146.1 | + | 97426 | 0.68 | 0.95907 |
Target: 5'- aCUUGGaCACCGGAgGugGA--UGGAAc -3' miRNA: 3'- gGAACC-GUGGCCUaCugUUguACCUU- -5' |
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29033 | 3' | -52 | NC_006146.1 | + | 87360 | 0.68 | 0.95907 |
Target: 5'- --aUGGgACUGGAUGACAAgcUGUGGGc -3' miRNA: 3'- ggaACCgUGGCCUACUGUU--GUACCUu -5' |
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29033 | 3' | -52 | NC_006146.1 | + | 141 | 0.68 | 0.95907 |
Target: 5'- --aUGGCGCCuGGAUGGCugccCGUGGu- -3' miRNA: 3'- ggaACCGUGG-CCUACUGuu--GUACCuu -5' |
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29033 | 3' | -52 | NC_006146.1 | + | 161727 | 0.68 | 0.962693 |
Target: 5'- gCUUGGgGgUGGGUGGCAcgGUGGGAg -3' miRNA: 3'- gGAACCgUgGCCUACUGUugUACCUU- -5' |
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29033 | 3' | -52 | NC_006146.1 | + | 70498 | 0.68 | 0.965757 |
Target: 5'- gCCUucUGGCAaggGGAUGGCugaaaugAGCGUGGAGg -3' miRNA: 3'- -GGA--ACCGUgg-CCUACUG-------UUGUACCUU- -5' |
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29033 | 3' | -52 | NC_006146.1 | + | 113295 | 0.67 | 0.972209 |
Target: 5'- aCCUUGGCccccACCGG--GACAAaaGUGGGAa -3' miRNA: 3'- -GGAACCG----UGGCCuaCUGUUg-UACCUU- -5' |
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29033 | 3' | -52 | NC_006146.1 | + | 4505 | 0.67 | 0.974952 |
Target: 5'- --aUGGCACUGGcgGGcCAGCggGGGGu -3' miRNA: 3'- ggaACCGUGGCCuaCU-GUUGuaCCUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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