Results 21 - 29 of 29 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 29033 | 3' | -52 | NC_006146.1 | + | 113295 | 0.67 | 0.972209 |
|
Target: 5'- aCCUUGGCccccACCGG--GACAAaaGUGGGAa -3' miRNA: 3'- -GGAACCG----UGGCCuaCUGUUg-UACCUU- -5' |
|||||||
| 29033 | 3' | -52 | NC_006146.1 | + | 127981 | 0.76 | 0.617864 |
|
Target: 5'- gCUUGGCGCCGcugcUGACAGCcgGGAc -3' miRNA: 3'- gGAACCGUGGCcu--ACUGUUGuaCCUu -5' |
|||||||
| 29033 | 3' | -52 | NC_006146.1 | + | 141475 | 0.69 | 0.932267 |
|
Target: 5'- gCC-UGGcCugCGGggGACAGgGUGGAc -3' miRNA: 3'- -GGaACC-GugGCCuaCUGUUgUACCUu -5' |
|||||||
| 29033 | 3' | -52 | NC_006146.1 | + | 144553 | 0.69 | 0.932267 |
|
Target: 5'- gCC-UGGcCugCGGggGACAGgGUGGAc -3' miRNA: 3'- -GGaACC-GugGCCuaCUGUUgUACCUu -5' |
|||||||
| 29033 | 3' | -52 | NC_006146.1 | + | 147631 | 0.69 | 0.932267 |
|
Target: 5'- gCC-UGGcCugCGGggGACAGgGUGGAc -3' miRNA: 3'- -GGaACC-GugGCCuaCUGUUgUACCUu -5' |
|||||||
| 29033 | 3' | -52 | NC_006146.1 | + | 150708 | 0.69 | 0.932267 |
|
Target: 5'- gCC-UGGcCugCGGggGACAGgGUGGAc -3' miRNA: 3'- -GGaACC-GugGCCuaCUGUUgUACCUu -5' |
|||||||
| 29033 | 3' | -52 | NC_006146.1 | + | 153786 | 0.69 | 0.932267 |
|
Target: 5'- gCC-UGGcCugCGGggGACAGgGUGGAc -3' miRNA: 3'- -GGaACC-GugGCCuaCUGUUgUACCUu -5' |
|||||||
| 29033 | 3' | -52 | NC_006146.1 | + | 156864 | 0.69 | 0.932267 |
|
Target: 5'- gCC-UGGcCugCGGggGACAGgGUGGAc -3' miRNA: 3'- -GGaACC-GugGCCuaCUGUUgUACCUu -5' |
|||||||
| 29033 | 3' | -52 | NC_006146.1 | + | 161727 | 0.68 | 0.962693 |
|
Target: 5'- gCUUGGgGgUGGGUGGCAcgGUGGGAg -3' miRNA: 3'- gGAACCgUgGCCUACUGUugUACCUU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home