Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29033 | 3' | -52 | NC_006146.1 | + | 79063 | 0.65 | 0.989762 |
Target: 5'- uCCgcaGGCGCCGGAcgcaugcgaUGACGGCugccaacuugcgcUGGAAg -3' miRNA: 3'- -GGaa-CCGUGGCCU---------ACUGUUGu------------ACCUU- -5' |
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29033 | 3' | -52 | NC_006146.1 | + | 51498 | 0.77 | 0.544004 |
Target: 5'- ---aGGUACCGGAUGAUcaggcgaAACAUGGAAg -3' miRNA: 3'- ggaaCCGUGGCCUACUG-------UUGUACCUU- -5' |
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29033 | 3' | -52 | NC_006146.1 | + | 127981 | 0.76 | 0.617864 |
Target: 5'- gCUUGGCGCCGcugcUGACAGCcgGGAc -3' miRNA: 3'- gGAACCGUGGCcu--ACUGUUGuaCCUu -5' |
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29033 | 3' | -52 | NC_006146.1 | + | 13831 | 0.7 | 0.889632 |
Target: 5'- uUCUcGGUGCUGGcgGACAGCGuccUGGAAa -3' miRNA: 3'- -GGAaCCGUGGCCuaCUGUUGU---ACCUU- -5' |
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29033 | 3' | -52 | NC_006146.1 | + | 141475 | 0.69 | 0.932267 |
Target: 5'- gCC-UGGcCugCGGggGACAGgGUGGAc -3' miRNA: 3'- -GGaACC-GugGCCuaCUGUUgUACCUu -5' |
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29033 | 3' | -52 | NC_006146.1 | + | 147631 | 0.69 | 0.932267 |
Target: 5'- gCC-UGGcCugCGGggGACAGgGUGGAc -3' miRNA: 3'- -GGaACC-GugGCCuaCUGUUgUACCUu -5' |
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29033 | 3' | -52 | NC_006146.1 | + | 144553 | 0.69 | 0.932267 |
Target: 5'- gCC-UGGcCugCGGggGACAGgGUGGAc -3' miRNA: 3'- -GGaACC-GugGCCuaCUGUUgUACCUu -5' |
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29033 | 3' | -52 | NC_006146.1 | + | 150708 | 0.69 | 0.932267 |
Target: 5'- gCC-UGGcCugCGGggGACAGgGUGGAc -3' miRNA: 3'- -GGaACC-GugGCCuaCUGUUgUACCUu -5' |
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29033 | 3' | -52 | NC_006146.1 | + | 153786 | 0.69 | 0.932267 |
Target: 5'- gCC-UGGcCugCGGggGACAGgGUGGAc -3' miRNA: 3'- -GGaACC-GugGCCuaCUGUUgUACCUu -5' |
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29033 | 3' | -52 | NC_006146.1 | + | 56303 | 0.66 | 0.987435 |
Target: 5'- aCCcUGGCcguGCUGGAcgaaGugAGCGUGGAc -3' miRNA: 3'- -GGaACCG---UGGCCUa---CugUUGUACCUu -5' |
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29033 | 3' | -52 | NC_006146.1 | + | 56825 | 0.66 | 0.981995 |
Target: 5'- --aUGGUGCCGGAUGAgAuuGCccGGAu -3' miRNA: 3'- ggaACCGUGGCCUACUgU--UGuaCCUu -5' |
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29033 | 3' | -52 | NC_006146.1 | + | 46891 | 0.66 | 0.981995 |
Target: 5'- uCCUgGGCACCuacaacGGGUGACGGagaagGGAGa -3' miRNA: 3'- -GGAaCCGUGG------CCUACUGUUgua--CCUU- -5' |
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29033 | 3' | -52 | NC_006146.1 | + | 97426 | 0.68 | 0.95907 |
Target: 5'- aCUUGGaCACCGGAgGugGA--UGGAAc -3' miRNA: 3'- gGAACC-GUGGCCUaCugUUguACCUU- -5' |
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29033 | 3' | -52 | NC_006146.1 | + | 54038 | 0.69 | 0.946776 |
Target: 5'- gCC-UGGCcggGCCGGAUGugGuggaggacgagaGCGUGGGu -3' miRNA: 3'- -GGaACCG---UGGCCUACugU------------UGUACCUu -5' |
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29033 | 3' | -52 | NC_006146.1 | + | 156864 | 0.69 | 0.932267 |
Target: 5'- gCC-UGGcCugCGGggGACAGgGUGGAc -3' miRNA: 3'- -GGaACC-GugGCCuaCUGUUgUACCUu -5' |
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29033 | 3' | -52 | NC_006146.1 | + | 64852 | 0.66 | 0.988932 |
Target: 5'- aCCUUcugccaGGCuccaaguCCGGAUGGgcggccacggcCAGCAUGGAc -3' miRNA: 3'- -GGAA------CCGu------GGCCUACU-----------GUUGUACCUu -5' |
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29033 | 3' | -52 | NC_006146.1 | + | 65064 | 0.74 | 0.711837 |
Target: 5'- cUCUUGGCAgcgccuCCGGAUGuCGGCcgGGGAc -3' miRNA: 3'- -GGAACCGU------GGCCUACuGUUGuaCCUU- -5' |
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29033 | 3' | -52 | NC_006146.1 | + | 33346 | 0.7 | 0.896465 |
Target: 5'- uCCggGGCAgCCGGGUGGCcGCcgGUGGGu -3' miRNA: 3'- -GGaaCCGU-GGCCUACUGuUG--UACCUu -5' |
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29033 | 3' | -52 | NC_006146.1 | + | 87360 | 0.68 | 0.95907 |
Target: 5'- --aUGGgACUGGAUGACAAgcUGUGGGc -3' miRNA: 3'- ggaACCgUGGCCUACUGUU--GUACCUu -5' |
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29033 | 3' | -52 | NC_006146.1 | + | 141 | 0.68 | 0.95907 |
Target: 5'- --aUGGCGCCuGGAUGGCugccCGUGGu- -3' miRNA: 3'- ggaACCGUGG-CCUACUGuu--GUACCuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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