miRNA display CGI


Results 1 - 20 of 26 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29034 3' -55.2 NC_006146.1 + 45038 0.66 0.926796
Target:  5'- gGCCUUCGAGgaGGgccucGCGGGCcuuGGGCu- -3'
miRNA:   3'- -UGGAAGUUUggCCa----CGCCCG---UUCGuu -5'
29034 3' -55.2 NC_006146.1 + 64238 0.66 0.926796
Target:  5'- cGCCU--GGGCCGGgGCGGGagGGGCGu -3'
miRNA:   3'- -UGGAagUUUGGCCaCGCCCg-UUCGUu -5'
29034 3' -55.2 NC_006146.1 + 126173 0.66 0.926796
Target:  5'- aGCCaUCAAGggGGgccaGUGGGCAGGCAc -3'
miRNA:   3'- -UGGaAGUUUggCCa---CGCCCGUUCGUu -5'
29034 3' -55.2 NC_006146.1 + 55008 0.66 0.921249
Target:  5'- aGCCcccCGGGCgGGaUGgGGGCGGGCGGg -3'
miRNA:   3'- -UGGaa-GUUUGgCC-ACgCCCGUUCGUU- -5'
29034 3' -55.2 NC_006146.1 + 12858 0.66 0.915453
Target:  5'- cGCCUggggCGAgGCUGGgugGCuGGGCAGGCc- -3'
miRNA:   3'- -UGGAa---GUU-UGGCCa--CG-CCCGUUCGuu -5'
29034 3' -55.2 NC_006146.1 + 30500 0.66 0.915453
Target:  5'- uGCCU--GAACCuGUGUugGGGCAGGUAGa -3'
miRNA:   3'- -UGGAagUUUGGcCACG--CCCGUUCGUU- -5'
29034 3' -55.2 NC_006146.1 + 168782 0.66 0.91486
Target:  5'- cCCUcacgggugggcgcUCAGAUCGGcGCGGGgGAGCc- -3'
miRNA:   3'- uGGA-------------AGUUUGGCCaCGCCCgUUCGuu -5'
29034 3' -55.2 NC_006146.1 + 167850 0.66 0.91486
Target:  5'- cCCUcacgggugggcgcUCAGAUCGGcGCGGGgGAGCc- -3'
miRNA:   3'- uGGA-------------AGUUUGGCCaCGCCCgUUCGuu -5'
29034 3' -55.2 NC_006146.1 + 169714 0.66 0.91486
Target:  5'- cCCUcacgggugggcgcUCAGAUCGGcGCGGGgGAGCc- -3'
miRNA:   3'- uGGA-------------AGUUUGGCCaCGCCCgUUCGuu -5'
29034 3' -55.2 NC_006146.1 + 55178 0.66 0.903125
Target:  5'- gACCgcguccCAGGCUGcGgccgcgGCGGGCGAGCGu -3'
miRNA:   3'- -UGGaa----GUUUGGC-Ca-----CGCCCGUUCGUu -5'
29034 3' -55.2 NC_006146.1 + 28248 0.67 0.889829
Target:  5'- cGCCUgggCGAgGCUGGgugGCuGGGCAGGCc- -3'
miRNA:   3'- -UGGAa--GUU-UGGCCa--CG-CCCGUUCGuu -5'
29034 3' -55.2 NC_006146.1 + 25170 0.67 0.889829
Target:  5'- cGCCUgggCGAgGCUGGgugGCuGGGCAGGCc- -3'
miRNA:   3'- -UGGAa--GUU-UGGCCa--CG-CCCGUUCGuu -5'
29034 3' -55.2 NC_006146.1 + 22092 0.67 0.889829
Target:  5'- cGCCUgggCGAgGCUGGgugGCuGGGCAGGCc- -3'
miRNA:   3'- -UGGAa--GUU-UGGCCa--CG-CCCGUUCGuu -5'
29034 3' -55.2 NC_006146.1 + 19014 0.67 0.889829
Target:  5'- cGCCUgggCGAgGCUGGgugGCuGGGCAGGCc- -3'
miRNA:   3'- -UGGAa--GUU-UGGCCa--CG-CCCGUUCGuu -5'
29034 3' -55.2 NC_006146.1 + 15937 0.67 0.889829
Target:  5'- cGCCUgggCGAgGCUGGgugGCuGGGCAGGCc- -3'
miRNA:   3'- -UGGAa--GUU-UGGCCa--CG-CCCGUUCGuu -5'
29034 3' -55.2 NC_006146.1 + 14000 0.67 0.882826
Target:  5'- gGCCUcggcCGGGCUGGUGCuggaaggcggaGGGCAgggAGCAGg -3'
miRNA:   3'- -UGGAa---GUUUGGCCACG-----------CCCGU---UCGUU- -5'
29034 3' -55.2 NC_006146.1 + 32044 0.67 0.868133
Target:  5'- gGCCcaggUCAugacCCGG-GCGuGGCGAGCAu -3'
miRNA:   3'- -UGGa---AGUuu--GGCCaCGC-CCGUUCGUu -5'
29034 3' -55.2 NC_006146.1 + 4663 0.68 0.85256
Target:  5'- cGCCgUCcuGGGCCGG-GUGGGCGAGgCGGg -3'
miRNA:   3'- -UGGaAG--UUUGGCCaCGCCCGUUC-GUU- -5'
29034 3' -55.2 NC_006146.1 + 71789 0.68 0.85256
Target:  5'- cGCCUg-AGGCCGGa--GGGCAGGCGc -3'
miRNA:   3'- -UGGAagUUUGGCCacgCCCGUUCGUu -5'
29034 3' -55.2 NC_006146.1 + 69828 0.68 0.843639
Target:  5'- aGCCUUgaccaccCAGACCGGcgagaaGCGGGUAcGCAGg -3'
miRNA:   3'- -UGGAA-------GUUUGGCCa-----CGCCCGUuCGUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.