miRNA display CGI


Results 1 - 20 of 123 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29035 3' -52.6 NC_006146.1 + 41505 0.66 0.983229
Target:  5'- gGU-CugGGGCAGGcuUCCGGCCcCAgaggaGGCc -3'
miRNA:   3'- -CAuGugUCCGUCC--AGGUUGGaGU-----UCG- -5'
29035 3' -52.6 NC_006146.1 + 120409 0.66 0.983229
Target:  5'- ---gACGGGguGGgggCCAACCU--GGCc -3'
miRNA:   3'- caugUGUCCguCCa--GGUUGGAguUCG- -5'
29035 3' -52.6 NC_006146.1 + 67972 0.66 0.983229
Target:  5'- cUGCGCAGGCAGcccaCGAUCUUggGg -3'
miRNA:   3'- cAUGUGUCCGUCcag-GUUGGAGuuCg -5'
29035 3' -52.6 NC_006146.1 + 4216 0.66 0.983229
Target:  5'- ---gACGGuGguGGUCaCGGCCUC-GGCa -3'
miRNA:   3'- caugUGUC-CguCCAG-GUUGGAGuUCG- -5'
29035 3' -52.6 NC_006146.1 + 77542 0.66 0.981187
Target:  5'- uUACACAGuGCAcuGGgagacgCCGACCaacCAGGCc -3'
miRNA:   3'- cAUGUGUC-CGU--CCa-----GGUUGGa--GUUCG- -5'
29035 3' -52.6 NC_006146.1 + 77915 0.66 0.981187
Target:  5'- -cGCAgGGGCGGG--CGGCCUCGcaGGUg -3'
miRNA:   3'- caUGUgUCCGUCCagGUUGGAGU--UCG- -5'
29035 3' -52.6 NC_006146.1 + 32876 0.66 0.979876
Target:  5'- -gGCGCgAGGUcccugccuggcaccaGGGUCCGGCUggGGGCg -3'
miRNA:   3'- caUGUG-UCCG---------------UCCAGGUUGGagUUCG- -5'
29035 3' -52.6 NC_006146.1 + 96030 0.66 0.978965
Target:  5'- uGUGcCACcGGCAuGGUgCCGGCCgUCAAGa -3'
miRNA:   3'- -CAU-GUGuCCGU-CCA-GGUUGG-AGUUCg -5'
29035 3' -52.6 NC_006146.1 + 136706 0.66 0.978262
Target:  5'- -gGCGCgAGGUcccugccuggcccaGGGUCCGGCUggGGGCg -3'
miRNA:   3'- caUGUG-UCCG--------------UCCAGGUUGGagUUCG- -5'
29035 3' -52.6 NC_006146.1 + 108261 0.66 0.976554
Target:  5'- -gACAgCAGGCAGG-CC-GCCggaAAGCc -3'
miRNA:   3'- caUGU-GUCCGUCCaGGuUGGag-UUCG- -5'
29035 3' -52.6 NC_006146.1 + 50428 0.66 0.976554
Target:  5'- ---gGCAGGCAGG-CCGcaaGCUUCGcGGCc -3'
miRNA:   3'- caugUGUCCGUCCaGGU---UGGAGU-UCG- -5'
29035 3' -52.6 NC_006146.1 + 9900 0.66 0.976554
Target:  5'- aUGCACAcGGCauggggcugAGGUCaGGCCUCAcucuGCa -3'
miRNA:   3'- cAUGUGU-CCG---------UCCAGgUUGGAGUu---CG- -5'
29035 3' -52.6 NC_006146.1 + 158822 0.66 0.976554
Target:  5'- -gGCACAcGGCcgGGGcCCGGcCCUCGcaaAGCg -3'
miRNA:   3'- caUGUGU-CCG--UCCaGGUU-GGAGU---UCG- -5'
29035 3' -52.6 NC_006146.1 + 125592 0.66 0.976554
Target:  5'- --cCGCAGGCacucuuuccucuGGGUCUuggucuggcgGGCCUCAggGGCa -3'
miRNA:   3'- cauGUGUCCG------------UCCAGG----------UUGGAGU--UCG- -5'
29035 3' -52.6 NC_006146.1 + 50695 0.66 0.976554
Target:  5'- --cCACAGGCA---CCGACCggCAGGCc -3'
miRNA:   3'- cauGUGUCCGUccaGGUUGGa-GUUCG- -5'
29035 3' -52.6 NC_006146.1 + 47668 0.66 0.976554
Target:  5'- -cACGCAGG--GGcCCAACCUCGcccuguaccAGCu -3'
miRNA:   3'- caUGUGUCCguCCaGGUUGGAGU---------UCG- -5'
29035 3' -52.6 NC_006146.1 + 32038 0.66 0.976554
Target:  5'- -gGCGCuGGCccAGGUCaUGACC-CGGGCg -3'
miRNA:   3'- caUGUGuCCG--UCCAG-GUUGGaGUUCG- -5'
29035 3' -52.6 NC_006146.1 + 94021 0.66 0.976554
Target:  5'- cGUGCGgcccGGCAGGggcaCGGCCcCGAGCg -3'
miRNA:   3'- -CAUGUgu--CCGUCCag--GUUGGaGUUCG- -5'
29035 3' -52.6 NC_006146.1 + 159979 0.66 0.976048
Target:  5'- -cGCGCAGGagcccgcaguugGGGUCUGGCCUCcuGUg -3'
miRNA:   3'- caUGUGUCCg-----------UCCAGGUUGGAGuuCG- -5'
29035 3' -52.6 NC_006146.1 + 159826 0.66 0.973946
Target:  5'- gGUAuCGCGGGUGGGg-CAACCUgUggGCg -3'
miRNA:   3'- -CAU-GUGUCCGUCCagGUUGGA-GuuCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.