miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29035 3' -52.6 NC_006146.1 + 78372 1.11 0.004618
Target:  5'- gGUACACAGGCAGGUCCAACCUCAAGCc -3'
miRNA:   3'- -CAUGUGUCCGUCCAGGUUGGAGUUCG- -5'
29035 3' -52.6 NC_006146.1 + 31993 0.82 0.289963
Target:  5'- --cCACAGGCAGGUCCAguaccgucACCUCA-GCc -3'
miRNA:   3'- cauGUGUCCGUCCAGGU--------UGGAGUuCG- -5'
29035 3' -52.6 NC_006146.1 + 91993 0.8 0.374085
Target:  5'- -cACACuGGCGGGcCCGGCCUgGGGCu -3'
miRNA:   3'- caUGUGuCCGUCCaGGUUGGAgUUCG- -5'
29035 3' -52.6 NC_006146.1 + 128208 0.79 0.444863
Target:  5'- -gGCGCuGGgGGGcucugCCAGCCUCAGGCa -3'
miRNA:   3'- caUGUGuCCgUCCa----GGUUGGAGUUCG- -5'
29035 3' -52.6 NC_006146.1 + 19264 0.77 0.532636
Target:  5'- -cGC-CAGGCgGGGUCCGGCCUCuccugGGGCa -3'
miRNA:   3'- caUGuGUCCG-UCCAGGUUGGAG-----UUCG- -5'
29035 3' -52.6 NC_006146.1 + 22342 0.77 0.532636
Target:  5'- -cGC-CAGGCgGGGUCCGGCCUCuccugGGGCa -3'
miRNA:   3'- caUGuGUCCG-UCCAGGUUGGAG-----UUCG- -5'
29035 3' -52.6 NC_006146.1 + 25420 0.77 0.532636
Target:  5'- -cGC-CAGGCgGGGUCCGGCCUCuccugGGGCa -3'
miRNA:   3'- caUGuGUCCG-UCCAGGUUGGAG-----UUCG- -5'
29035 3' -52.6 NC_006146.1 + 28498 0.77 0.532636
Target:  5'- -cGC-CAGGCgGGGUCCGGCCUCuccugGGGCa -3'
miRNA:   3'- caUGuGUCCG-UCCAGGUUGGAG-----UUCG- -5'
29035 3' -52.6 NC_006146.1 + 16186 0.77 0.532636
Target:  5'- -cGC-CAGGCgGGGUCCGGCCUCuccugGGGCa -3'
miRNA:   3'- caUGuGUCCG-UCCAGGUUGGAG-----UUCG- -5'
29035 3' -52.6 NC_006146.1 + 13108 0.77 0.532636
Target:  5'- -cGC-CAGGCgGGGUCCGGCCUCuccugGGGCa -3'
miRNA:   3'- caUGuGUCCG-UCCAGGUUGGAG-----UUCG- -5'
29035 3' -52.6 NC_006146.1 + 92319 0.75 0.657281
Target:  5'- cUGCugGggGGCGGGcCCGGCCUgGGGCa -3'
miRNA:   3'- cAUGugU--CCGUCCaGGUUGGAgUUCG- -5'
29035 3' -52.6 NC_006146.1 + 141296 0.74 0.698855
Target:  5'- -aGCAUuGGCGGGUUCAGCCUggcUGAGCc -3'
miRNA:   3'- caUGUGuCCGUCCAGGUUGGA---GUUCG- -5'
29035 3' -52.6 NC_006146.1 + 92289 0.74 0.709126
Target:  5'- cUGCugGggGGCGGGcCCGGCCUgGGGCu -3'
miRNA:   3'- cAUGugU--CCGUCCaGGUUGGAgUUCG- -5'
29035 3' -52.6 NC_006146.1 + 92199 0.74 0.709126
Target:  5'- cUGCugGggGGCGGGcCCGGCCUgGGGCu -3'
miRNA:   3'- cAUGugU--CCGUCCaGGUUGGAgUUCG- -5'
29035 3' -52.6 NC_006146.1 + 92259 0.74 0.709126
Target:  5'- cUGCugGggGGCGGGcCCGGCCUgGGGCu -3'
miRNA:   3'- cAUGugU--CCGUCCaGGUUGGAgUUCG- -5'
29035 3' -52.6 NC_006146.1 + 92020 0.74 0.709126
Target:  5'- cUGCugGggGGCGGGcCCGGCCUgGGGCu -3'
miRNA:   3'- cAUGugU--CCGUCCaGGUUGGAgUUCG- -5'
29035 3' -52.6 NC_006146.1 + 92050 0.74 0.709126
Target:  5'- cUGCugGggGGCGGGcCCGGCCUgGGGCu -3'
miRNA:   3'- cAUGugU--CCGUCCaGGUUGGAgUUCG- -5'
29035 3' -52.6 NC_006146.1 + 92169 0.74 0.709126
Target:  5'- cUGCugGggGGCGGGcCCGGCCUgGGGCu -3'
miRNA:   3'- cAUGugU--CCGUCCaGGUUGGAgUUCG- -5'
29035 3' -52.6 NC_006146.1 + 92139 0.74 0.709126
Target:  5'- cUGCugGggGGCGGGcCCGGCCUgGGGCu -3'
miRNA:   3'- cAUGugU--CCGUCCaGGUUGGAgUUCG- -5'
29035 3' -52.6 NC_006146.1 + 92109 0.74 0.709126
Target:  5'- cUGCugGggGGCGGGcCCGGCCUgGGGCu -3'
miRNA:   3'- cAUGugU--CCGUCCaGGUUGGAgUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.