miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29035 3' -52.6 NC_006146.1 + 111149 0.66 0.973946
Target:  5'- --uCGCAGGUAGcG-CCG-CUUCAGGCg -3'
miRNA:   3'- cauGUGUCCGUC-CaGGUuGGAGUUCG- -5'
29035 3' -52.6 NC_006146.1 + 105614 0.66 0.973124
Target:  5'- -aGCGCAGcCAGGUCCAcaGCCgCAcggaugaaaguuauGGCa -3'
miRNA:   3'- caUGUGUCcGUCCAGGU--UGGaGU--------------UCG- -5'
29035 3' -52.6 NC_006146.1 + 119816 0.67 0.971134
Target:  5'- -aGCGCaAGGCGGGggaCCGGCCagAGGa -3'
miRNA:   3'- caUGUG-UCCGUCCa--GGUUGGagUUCg -5'
29035 3' -52.6 NC_006146.1 + 68305 0.67 0.96811
Target:  5'- ---aACAGGCGGaagCCcuCCUCGGGCc -3'
miRNA:   3'- caugUGUCCGUCca-GGuuGGAGUUCG- -5'
29035 3' -52.6 NC_006146.1 + 113823 0.67 0.96811
Target:  5'- cGUACAgCAGGUuGG-CCAuccGCgUCAGGCc -3'
miRNA:   3'- -CAUGU-GUCCGuCCaGGU---UGgAGUUCG- -5'
29035 3' -52.6 NC_006146.1 + 44171 0.67 0.96811
Target:  5'- -cGCACaacuGGGCGGuGcccUCCAGCCUCu-GCg -3'
miRNA:   3'- caUGUG----UCCGUC-C---AGGUUGGAGuuCG- -5'
29035 3' -52.6 NC_006146.1 + 76807 0.67 0.96811
Target:  5'- --cUACGGGgGGGUCUAcGCCUUcAGCc -3'
miRNA:   3'- cauGUGUCCgUCCAGGU-UGGAGuUCG- -5'
29035 3' -52.6 NC_006146.1 + 15956 0.67 0.96811
Target:  5'- -gGC-UGGGCAGG-CCggUCUCGGGUc -3'
miRNA:   3'- caUGuGUCCGUCCaGGuuGGAGUUCG- -5'
29035 3' -52.6 NC_006146.1 + 128884 0.67 0.964868
Target:  5'- -gGCGgAGGCGGGcCCGAacgCGGGCu -3'
miRNA:   3'- caUGUgUCCGUCCaGGUUggaGUUCG- -5'
29035 3' -52.6 NC_006146.1 + 71591 0.67 0.964868
Target:  5'- --cCGCA-GCAGGUCUGGCCcugacCAGGCg -3'
miRNA:   3'- cauGUGUcCGUCCAGGUUGGa----GUUCG- -5'
29035 3' -52.6 NC_006146.1 + 168463 0.67 0.964868
Target:  5'- cGUugACGGugcGCAGaUCCGGCCUCAcGUc -3'
miRNA:   3'- -CAugUGUC---CGUCcAGGUUGGAGUuCG- -5'
29035 3' -52.6 NC_006146.1 + 154981 0.67 0.964868
Target:  5'- -cGCcCAGGCgccuccucGGGUCCGGCCgccggaGGGCu -3'
miRNA:   3'- caUGuGUCCG--------UCCAGGUUGGag----UUCG- -5'
29035 3' -52.6 NC_006146.1 + 148825 0.67 0.964868
Target:  5'- -cGCcCAGGCgccuccucGGGUCCGGCCgccggaGGGCu -3'
miRNA:   3'- caUGuGUCCG--------UCCAGGUUGGag----UUCG- -5'
29035 3' -52.6 NC_006146.1 + 145747 0.67 0.964868
Target:  5'- -cGCcCAGGCgccuccucGGGUCCGGCCgccggaGGGCu -3'
miRNA:   3'- caUGuGUCCG--------UCCAGGUUGGag----UUCG- -5'
29035 3' -52.6 NC_006146.1 + 142670 0.67 0.964868
Target:  5'- -cGCcCAGGCgccuccucGGGUCCGGCCgccggaGGGCu -3'
miRNA:   3'- caUGuGUCCG--------UCCAGGUUGGag----UUCG- -5'
29035 3' -52.6 NC_006146.1 + 95250 0.67 0.964868
Target:  5'- -cACGCAcGCAcGGUCCuugGCCUCugcAAGCu -3'
miRNA:   3'- caUGUGUcCGU-CCAGGu--UGGAG---UUCG- -5'
29035 3' -52.6 NC_006146.1 + 151903 0.67 0.964868
Target:  5'- -cGCcCAGGCgccuccucGGGUCCGGCCgccggaGGGCu -3'
miRNA:   3'- caUGuGUCCG--------UCCAGGUUGGag----UUCG- -5'
29035 3' -52.6 NC_006146.1 + 110889 0.67 0.964868
Target:  5'- -gGCGCAGGCGGGgacggggCCGcguugGCCUU--GCa -3'
miRNA:   3'- caUGUGUCCGUCCa------GGU-----UGGAGuuCG- -5'
29035 3' -52.6 NC_006146.1 + 68736 0.67 0.963852
Target:  5'- uGU-CGCGGGguGGUggaggcccagguggCCaAGCUUCAGGCg -3'
miRNA:   3'- -CAuGUGUCCguCCA--------------GG-UUGGAGUUCG- -5'
29035 3' -52.6 NC_006146.1 + 137502 0.67 0.961402
Target:  5'- gGUGCcCAGGCGGG-CCAccccccACCcgGAGCg -3'
miRNA:   3'- -CAUGuGUCCGUCCaGGU------UGGagUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.