miRNA display CGI


Results 1 - 20 of 123 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29035 3' -52.6 NC_006146.1 + 2488 0.69 0.925053
Target:  5'- -gGCGgGGGCAGGcagCUGGCCgaCGAGCu -3'
miRNA:   3'- caUGUgUCCGUCCa--GGUUGGa-GUUCG- -5'
29035 3' -52.6 NC_006146.1 + 4216 0.66 0.983229
Target:  5'- ---gACGGuGguGGUCaCGGCCUC-GGCa -3'
miRNA:   3'- caugUGUC-CguCCAG-GUUGGAGuUCG- -5'
29035 3' -52.6 NC_006146.1 + 9900 0.66 0.976554
Target:  5'- aUGCACAcGGCauggggcugAGGUCaGGCCUCAcucuGCa -3'
miRNA:   3'- cAUGUGU-CCG---------UCCAGgUUGGAGUu---CG- -5'
29035 3' -52.6 NC_006146.1 + 10297 0.72 0.80643
Target:  5'- aUGC-CAGGC-GG-CCGACCUCGggGGCa -3'
miRNA:   3'- cAUGuGUCCGuCCaGGUUGGAGU--UCG- -5'
29035 3' -52.6 NC_006146.1 + 13108 0.77 0.532636
Target:  5'- -cGC-CAGGCgGGGUCCGGCCUCuccugGGGCa -3'
miRNA:   3'- caUGuGUCCG-UCCAGGUUGGAG-----UUCG- -5'
29035 3' -52.6 NC_006146.1 + 14761 0.67 0.957705
Target:  5'- -aGguCAGGCAGG-CgGGgCUCGGGCa -3'
miRNA:   3'- caUguGUCCGUCCaGgUUgGAGUUCG- -5'
29035 3' -52.6 NC_006146.1 + 15956 0.67 0.96811
Target:  5'- -gGC-UGGGCAGG-CCggUCUCGGGUc -3'
miRNA:   3'- caUGuGUCCGUCCaGGuuGGAGUUCG- -5'
29035 3' -52.6 NC_006146.1 + 16186 0.77 0.532636
Target:  5'- -cGC-CAGGCgGGGUCCGGCCUCuccugGGGCa -3'
miRNA:   3'- caUGuGUCCG-UCCAGGUUGGAG-----UUCG- -5'
29035 3' -52.6 NC_006146.1 + 19264 0.77 0.532636
Target:  5'- -cGC-CAGGCgGGGUCCGGCCUCuccugGGGCa -3'
miRNA:   3'- caUGuGUCCG-UCCAGGUUGGAG-----UUCG- -5'
29035 3' -52.6 NC_006146.1 + 22342 0.77 0.532636
Target:  5'- -cGC-CAGGCgGGGUCCGGCCUCuccugGGGCa -3'
miRNA:   3'- caUGuGUCCG-UCCAGGUUGGAG-----UUCG- -5'
29035 3' -52.6 NC_006146.1 + 25420 0.77 0.532636
Target:  5'- -cGC-CAGGCgGGGUCCGGCCUCuccugGGGCa -3'
miRNA:   3'- caUGuGUCCG-UCCAGGUUGGAG-----UUCG- -5'
29035 3' -52.6 NC_006146.1 + 28498 0.77 0.532636
Target:  5'- -cGC-CAGGCgGGGUCCGGCCUCuccugGGGCa -3'
miRNA:   3'- caUGuGUCCG-UCCAGGUUGGAG-----UUCG- -5'
29035 3' -52.6 NC_006146.1 + 30510 0.69 0.907322
Target:  5'- uGUGUugGGGCAGGUagauaccaaCAGCCUUuuAAGCa -3'
miRNA:   3'- -CAUGugUCCGUCCAg--------GUUGGAG--UUCG- -5'
29035 3' -52.6 NC_006146.1 + 31993 0.82 0.289963
Target:  5'- --cCACAGGCAGGUCCAguaccgucACCUCA-GCc -3'
miRNA:   3'- cauGUGUCCGUCCAGGU--------UGGAGUuCG- -5'
29035 3' -52.6 NC_006146.1 + 32038 0.66 0.976554
Target:  5'- -gGCGCuGGCccAGGUCaUGACC-CGGGCg -3'
miRNA:   3'- caUGUGuCCG--UCCAG-GUUGGaGUUCG- -5'
29035 3' -52.6 NC_006146.1 + 32144 0.69 0.900916
Target:  5'- gGUGCugGGGUGGGggaUGGgCUCAGGCa -3'
miRNA:   3'- -CAUGugUCCGUCCag-GUUgGAGUUCG- -5'
29035 3' -52.6 NC_006146.1 + 32876 0.66 0.979876
Target:  5'- -gGCGCgAGGUcccugccuggcaccaGGGUCCGGCUggGGGCg -3'
miRNA:   3'- caUGUG-UCCG---------------UCCAGGUUGGagUUCG- -5'
29035 3' -52.6 NC_006146.1 + 34198 0.68 0.93562
Target:  5'- gGUGC-CAGGCAGG---GACCUCGcGCc -3'
miRNA:   3'- -CAUGuGUCCGUCCaggUUGGAGUuCG- -5'
29035 3' -52.6 NC_006146.1 + 40227 0.69 0.919392
Target:  5'- -cACGCgagGGGCccGGGauguagUCCGACCUCGGGUg -3'
miRNA:   3'- caUGUG---UCCG--UCC------AGGUUGGAGUUCG- -5'
29035 3' -52.6 NC_006146.1 + 40286 0.69 0.907322
Target:  5'- -gGCGgAGGCGGG-CCAaagagGCCgggCAGGCc -3'
miRNA:   3'- caUGUgUCCGUCCaGGU-----UGGa--GUUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.