miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29035 3' -52.6 NC_006146.1 + 78372 1.11 0.004618
Target:  5'- gGUACACAGGCAGGUCCAACCUCAAGCc -3'
miRNA:   3'- -CAUGUGUCCGUCCAGGUUGGAGUUCG- -5'
29035 3' -52.6 NC_006146.1 + 30510 0.69 0.907322
Target:  5'- uGUGUugGGGCAGGUagauaccaaCAGCCUUuuAAGCa -3'
miRNA:   3'- -CAUGugUCCGUCCAg--------GUUGGAG--UUCG- -5'
29035 3' -52.6 NC_006146.1 + 112541 0.69 0.918812
Target:  5'- ---uGCAGGCgcugguguagacgAGGUCCAugC-CAGGCu -3'
miRNA:   3'- caugUGUCCG-------------UCCAGGUugGaGUUCG- -5'
29035 3' -52.6 NC_006146.1 + 4216 0.66 0.983229
Target:  5'- ---gACGGuGguGGUCaCGGCCUC-GGCa -3'
miRNA:   3'- caugUGUC-CguCCAG-GUUGGAGuUCG- -5'
29035 3' -52.6 NC_006146.1 + 19264 0.77 0.532636
Target:  5'- -cGC-CAGGCgGGGUCCGGCCUCuccugGGGCa -3'
miRNA:   3'- caUGuGUCCG-UCCAGGUUGGAG-----UUCG- -5'
29035 3' -52.6 NC_006146.1 + 22342 0.77 0.532636
Target:  5'- -cGC-CAGGCgGGGUCCGGCCUCuccugGGGCa -3'
miRNA:   3'- caUGuGUCCG-UCCAGGUUGGAG-----UUCG- -5'
29035 3' -52.6 NC_006146.1 + 28498 0.77 0.532636
Target:  5'- -cGC-CAGGCgGGGUCCGGCCUCuccugGGGCa -3'
miRNA:   3'- caUGuGUCCG-UCCAGGUUGGAG-----UUCG- -5'
29035 3' -52.6 NC_006146.1 + 141296 0.74 0.698855
Target:  5'- -aGCAUuGGCGGGUUCAGCCUggcUGAGCc -3'
miRNA:   3'- caUGUGuCCGUCCAGGUUGGA---GUUCG- -5'
29035 3' -52.6 NC_006146.1 + 44075 0.71 0.832825
Target:  5'- cUGCAUgccgggacuGGGguGGUUCcACCUCGGGCc -3'
miRNA:   3'- cAUGUG---------UCCguCCAGGuUGGAGUUCG- -5'
29035 3' -52.6 NC_006146.1 + 56251 0.69 0.900916
Target:  5'- -gGCGgAGGCGGGgCCGuCCUC-GGCg -3'
miRNA:   3'- caUGUgUCCGUCCaGGUuGGAGuUCG- -5'
29035 3' -52.6 NC_006146.1 + 155387 0.71 0.857497
Target:  5'- uUGCGCAGGCAGG-CCA-UCUCccAGUa -3'
miRNA:   3'- cAUGUGUCCGUCCaGGUuGGAGu-UCG- -5'
29035 3' -52.6 NC_006146.1 + 139271 0.72 0.787991
Target:  5'- cUGCugAGGUggcagaGGGcCCGGCCUUGAGCc -3'
miRNA:   3'- cAUGugUCCG------UCCaGGUUGGAGUUCG- -5'
29035 3' -52.6 NC_006146.1 + 31993 0.82 0.289963
Target:  5'- --cCACAGGCAGGUCCAguaccgucACCUCA-GCc -3'
miRNA:   3'- cauGUGUCCGUCCAGGU--------UGGAGUuCG- -5'
29035 3' -52.6 NC_006146.1 + 40733 0.7 0.865303
Target:  5'- -cGgGCAGGCGGGcCCGugCUUggGg -3'
miRNA:   3'- caUgUGUCCGUCCaGGUugGAGuuCg -5'
29035 3' -52.6 NC_006146.1 + 13108 0.77 0.532636
Target:  5'- -cGC-CAGGCgGGGUCCGGCCUCuccugGGGCa -3'
miRNA:   3'- caUGuGUCCG-UCCAGGUUGGAG-----UUCG- -5'
29035 3' -52.6 NC_006146.1 + 115358 0.73 0.739486
Target:  5'- cUACACAGGCAGcgcGUCC--CCUCGGGg -3'
miRNA:   3'- cAUGUGUCCGUC---CAGGuuGGAGUUCg -5'
29035 3' -52.6 NC_006146.1 + 113679 0.7 0.880247
Target:  5'- -gGCuCGGGCccGGGcCCGGCCUCcGGCc -3'
miRNA:   3'- caUGuGUCCG--UCCaGGUUGGAGuUCG- -5'
29035 3' -52.6 NC_006146.1 + 96834 0.69 0.913482
Target:  5'- -cGgGCGGGCAGGUugggcccgcuUCAGCCUCugccGCg -3'
miRNA:   3'- caUgUGUCCGUCCA----------GGUUGGAGuu--CG- -5'
29035 3' -52.6 NC_006146.1 + 16186 0.77 0.532636
Target:  5'- -cGC-CAGGCgGGGUCCGGCCUCuccugGGGCa -3'
miRNA:   3'- caUGuGUCCG-UCCAGGUUGGAG-----UUCG- -5'
29035 3' -52.6 NC_006146.1 + 25420 0.77 0.532636
Target:  5'- -cGC-CAGGCgGGGUCCGGCCUCuccugGGGCa -3'
miRNA:   3'- caUGuGUCCG-UCCAGGUUGGAG-----UUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.