miRNA display CGI


Results 1 - 20 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29035 5' -55.9 NC_006146.1 + 132869 0.66 0.944074
Target:  5'- cCCACUgUGAgGUCugCaUCAACaaaUCCCa -3'
miRNA:   3'- -GGUGAgACU-CGGugGaAGUUGg--GGGG- -5'
29035 5' -55.9 NC_006146.1 + 55115 0.66 0.944074
Target:  5'- -aACcCUG-GCCACCUgcucguacUCGGCCUCCg -3'
miRNA:   3'- ggUGaGACuCGGUGGA--------AGUUGGGGGg -5'
29035 5' -55.9 NC_006146.1 + 75153 0.66 0.944074
Target:  5'- uCCAaaaccgGGGCCAacacCAGCCCCCCc -3'
miRNA:   3'- -GGUgaga--CUCGGUggaaGUUGGGGGG- -5'
29035 5' -55.9 NC_006146.1 + 7119 0.66 0.944074
Target:  5'- uCCGCUCUuuuGUCuguCCUUCuGCUCCCa -3'
miRNA:   3'- -GGUGAGAcu-CGGu--GGAAGuUGGGGGg -5'
29035 5' -55.9 NC_006146.1 + 124188 0.66 0.944074
Target:  5'- cCCGcCUCgGAGCCGCCgcggcCGACUCUUa -3'
miRNA:   3'- -GGU-GAGaCUCGGUGGaa---GUUGGGGGg -5'
29035 5' -55.9 NC_006146.1 + 75442 0.66 0.944074
Target:  5'- -aGCUCUcaGAGCCccCCUUCcuGCCCUUCu -3'
miRNA:   3'- ggUGAGA--CUCGGu-GGAAGu-UGGGGGG- -5'
29035 5' -55.9 NC_006146.1 + 67322 0.66 0.943631
Target:  5'- uCCGCgCUGAGCCcgGCCca-GGCCCgggcgagCCCa -3'
miRNA:   3'- -GGUGaGACUCGG--UGGaagUUGGG-------GGG- -5'
29035 5' -55.9 NC_006146.1 + 45168 0.66 0.943631
Target:  5'- cCCGCUggucucuUUGAG-CACCU--GGCCUCCCa -3'
miRNA:   3'- -GGUGA-------GACUCgGUGGAagUUGGGGGG- -5'
29035 5' -55.9 NC_006146.1 + 126562 0.66 0.939538
Target:  5'- cCCAUc---AGCCACCUgugCAgaaGCCCCCg -3'
miRNA:   3'- -GGUGagacUCGGUGGAa--GU---UGGGGGg -5'
29035 5' -55.9 NC_006146.1 + 16206 0.66 0.939538
Target:  5'- gCUGCaUCUGGGCgcagacCACCcagCAgccagcGCCCCCCg -3'
miRNA:   3'- -GGUG-AGACUCG------GUGGaa-GU------UGGGGGG- -5'
29035 5' -55.9 NC_006146.1 + 129281 0.66 0.939538
Target:  5'- gCUGgUCUGcGCCcggGCCcagcggacCAGCCCCCCg -3'
miRNA:   3'- -GGUgAGACuCGG---UGGaa------GUUGGGGGG- -5'
29035 5' -55.9 NC_006146.1 + 402 0.66 0.939538
Target:  5'- gCCGCgcgCUGGGgguCCggggaAGCCCCCCg -3'
miRNA:   3'- -GGUGa--GACUCgguGGaag--UUGGGGGG- -5'
29035 5' -55.9 NC_006146.1 + 1581 0.66 0.939538
Target:  5'- uCCuCUCguuaccccgGAGCaUGCCcgccCGACCCCCCg -3'
miRNA:   3'- -GGuGAGa--------CUCG-GUGGaa--GUUGGGGGG- -5'
29035 5' -55.9 NC_006146.1 + 2513 0.66 0.939538
Target:  5'- uCCuCUCguuaccccgGAGCaUGCCcgccCGACCCCCCg -3'
miRNA:   3'- -GGuGAGa--------CUCG-GUGGaa--GUUGGGGGG- -5'
29035 5' -55.9 NC_006146.1 + 3445 0.66 0.939538
Target:  5'- uCCuCUCguuaccccgGAGCaUGCCcgccCGACCCCCCg -3'
miRNA:   3'- -GGuGAGa--------CUCG-GUGGaa--GUUGGGGGG- -5'
29035 5' -55.9 NC_006146.1 + 59487 0.66 0.939538
Target:  5'- gCCACggCUGAGUccugaCugCUguuGCCCUCCa -3'
miRNA:   3'- -GGUGa-GACUCG-----GugGAaguUGGGGGG- -5'
29035 5' -55.9 NC_006146.1 + 120699 0.66 0.939538
Target:  5'- aCCACUCaccccccGGGCCuacccgagcccGCCgcaagugCAaacGCCCCCCu -3'
miRNA:   3'- -GGUGAGa------CUCGG-----------UGGaa-----GU---UGGGGGG- -5'
29035 5' -55.9 NC_006146.1 + 650 0.66 0.939538
Target:  5'- uCCuCUCguuaccccgGAGCaUGCCcgccCGACCCCCCg -3'
miRNA:   3'- -GGuGAGa--------CUCG-GUGGaa--GUUGGGGGG- -5'
29035 5' -55.9 NC_006146.1 + 26094 0.66 0.939537
Target:  5'- gCCugUCcuccCCGCCUcccucccCGGCCCCCCu -3'
miRNA:   3'- -GGugAGacucGGUGGAa------GUUGGGGGG- -5'
29035 5' -55.9 NC_006146.1 + 29172 0.66 0.939537
Target:  5'- gCCugUCcuccCCGCCUcccucccCGGCCCCCCu -3'
miRNA:   3'- -GGugAGacucGGUGGAa------GUUGGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.