Results 1 - 20 of 228 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29035 | 5' | -55.9 | NC_006146.1 | + | 75153 | 0.66 | 0.944074 |
Target: 5'- uCCAaaaccgGGGCCAacacCAGCCCCCCc -3' miRNA: 3'- -GGUgaga--CUCGGUggaaGUUGGGGGG- -5' |
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29035 | 5' | -55.9 | NC_006146.1 | + | 129281 | 0.66 | 0.939538 |
Target: 5'- gCUGgUCUGcGCCcggGCCcagcggacCAGCCCCCCg -3' miRNA: 3'- -GGUgAGACuCGG---UGGaa------GUUGGGGGG- -5' |
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29035 | 5' | -55.9 | NC_006146.1 | + | 16206 | 0.66 | 0.939538 |
Target: 5'- gCUGCaUCUGGGCgcagacCACCcagCAgccagcGCCCCCCg -3' miRNA: 3'- -GGUG-AGACUCG------GUGGaa-GU------UGGGGGG- -5' |
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29035 | 5' | -55.9 | NC_006146.1 | + | 102449 | 0.66 | 0.934771 |
Target: 5'- uCCAgUCgggGAgguagaagGCCAUCgUUCuguuuACCCCCCa -3' miRNA: 3'- -GGUgAGa--CU--------CGGUGG-AAGu----UGGGGGG- -5' |
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29035 | 5' | -55.9 | NC_006146.1 | + | 115729 | 0.66 | 0.934771 |
Target: 5'- gCCGCagcCUGGGaCGCggUC-ACCCCCCu -3' miRNA: 3'- -GGUGa--GACUCgGUGgaAGuUGGGGGG- -5' |
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29035 | 5' | -55.9 | NC_006146.1 | + | 140500 | 0.66 | 0.934771 |
Target: 5'- cUCAgUUUGcGCCACCUggCGGCCCUa- -3' miRNA: 3'- -GGUgAGACuCGGUGGAa-GUUGGGGgg -5' |
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29035 | 5' | -55.9 | NC_006146.1 | + | 56652 | 0.66 | 0.9318 |
Target: 5'- aCCACUacgagcuggcccuccCUGAGgUGCCg--GGCCCCCUg -3' miRNA: 3'- -GGUGA---------------GACUCgGUGGaagUUGGGGGG- -5' |
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29035 | 5' | -55.9 | NC_006146.1 | + | 86079 | 0.66 | 0.929772 |
Target: 5'- gCugUCgGAGCCACUgccacaugUUCAGCagCCCa -3' miRNA: 3'- gGugAGaCUCGGUGG--------AAGUUGggGGG- -5' |
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29035 | 5' | -55.9 | NC_006146.1 | + | 48543 | 0.66 | 0.929772 |
Target: 5'- gUACUUuccaaggaauUGAGCCAUggugCUgagcUCGGCCCCCUg -3' miRNA: 3'- gGUGAG----------ACUCGGUG----GA----AGUUGGGGGG- -5' |
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29035 | 5' | -55.9 | NC_006146.1 | + | 402 | 0.66 | 0.939538 |
Target: 5'- gCCGCgcgCUGGGgguCCggggaAGCCCCCCg -3' miRNA: 3'- -GGUGa--GACUCgguGGaag--UUGGGGGG- -5' |
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29035 | 5' | -55.9 | NC_006146.1 | + | 650 | 0.66 | 0.939538 |
Target: 5'- uCCuCUCguuaccccgGAGCaUGCCcgccCGACCCCCCg -3' miRNA: 3'- -GGuGAGa--------CUCG-GUGGaa--GUUGGGGGG- -5' |
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29035 | 5' | -55.9 | NC_006146.1 | + | 1581 | 0.66 | 0.939538 |
Target: 5'- uCCuCUCguuaccccgGAGCaUGCCcgccCGACCCCCCg -3' miRNA: 3'- -GGuGAGa--------CUCG-GUGGaa--GUUGGGGGG- -5' |
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29035 | 5' | -55.9 | NC_006146.1 | + | 124188 | 0.66 | 0.944074 |
Target: 5'- cCCGcCUCgGAGCCGCCgcggcCGACUCUUa -3' miRNA: 3'- -GGU-GAGaCUCGGUGGaa---GUUGGGGGg -5' |
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29035 | 5' | -55.9 | NC_006146.1 | + | 75442 | 0.66 | 0.944074 |
Target: 5'- -aGCUCUcaGAGCCccCCUUCcuGCCCUUCu -3' miRNA: 3'- ggUGAGA--CUCGGu-GGAAGu-UGGGGGG- -5' |
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29035 | 5' | -55.9 | NC_006146.1 | + | 45168 | 0.66 | 0.943631 |
Target: 5'- cCCGCUggucucuUUGAG-CACCU--GGCCUCCCa -3' miRNA: 3'- -GGUGA-------GACUCgGUGGAagUUGGGGGG- -5' |
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29035 | 5' | -55.9 | NC_006146.1 | + | 126562 | 0.66 | 0.939538 |
Target: 5'- cCCAUc---AGCCACCUgugCAgaaGCCCCCg -3' miRNA: 3'- -GGUGagacUCGGUGGAa--GU---UGGGGGg -5' |
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29035 | 5' | -55.9 | NC_006146.1 | + | 120699 | 0.66 | 0.939538 |
Target: 5'- aCCACUCaccccccGGGCCuacccgagcccGCCgcaagugCAaacGCCCCCCu -3' miRNA: 3'- -GGUGAGa------CUCGG-----------UGGaa-----GU---UGGGGGG- -5' |
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29035 | 5' | -55.9 | NC_006146.1 | + | 59487 | 0.66 | 0.939538 |
Target: 5'- gCCACggCUGAGUccugaCugCUguuGCCCUCCa -3' miRNA: 3'- -GGUGa-GACUCG-----GugGAaguUGGGGGG- -5' |
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29035 | 5' | -55.9 | NC_006146.1 | + | 3445 | 0.66 | 0.939538 |
Target: 5'- uCCuCUCguuaccccgGAGCaUGCCcgccCGACCCCCCg -3' miRNA: 3'- -GGuGAGa--------CUCG-GUGGaa--GUUGGGGGG- -5' |
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29035 | 5' | -55.9 | NC_006146.1 | + | 2513 | 0.66 | 0.939538 |
Target: 5'- uCCuCUCguuaccccgGAGCaUGCCcgccCGACCCCCCg -3' miRNA: 3'- -GGuGAGa--------CUCG-GUGGaa--GUUGGGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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