Results 1 - 20 of 228 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29035 | 5' | -55.9 | NC_006146.1 | + | 78411 | 1.14 | 0.001617 |
Target: 5'- cCCACUCUGAGCCACCUUCAACCCCCCg -3' miRNA: 3'- -GGUGAGACUCGGUGGAAGUUGGGGGG- -5' |
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29035 | 5' | -55.9 | NC_006146.1 | + | 138940 | 0.85 | 0.135161 |
Target: 5'- aUCACUCUGAGCCACUa--AGCCCCCa -3' miRNA: 3'- -GGUGAGACUCGGUGGaagUUGGGGGg -5' |
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29035 | 5' | -55.9 | NC_006146.1 | + | 35107 | 0.8 | 0.256372 |
Target: 5'- aUCACUUUGAGCCACUa--AGCCCCCg -3' miRNA: 3'- -GGUGAGACUCGGUGGaagUUGGGGGg -5' |
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29035 | 5' | -55.9 | NC_006146.1 | + | 17265 | 0.79 | 0.301548 |
Target: 5'- gCC-CUCUGAGCCcCCUUU-GCCCCCUg -3' miRNA: 3'- -GGuGAGACUCGGuGGAAGuUGGGGGG- -5' |
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29035 | 5' | -55.9 | NC_006146.1 | + | 23421 | 0.79 | 0.301548 |
Target: 5'- gCC-CUCUGAGCCcCCUUU-GCCCCCUg -3' miRNA: 3'- -GGuGAGACUCGGuGGAAGuUGGGGGG- -5' |
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29035 | 5' | -55.9 | NC_006146.1 | + | 14187 | 0.79 | 0.301548 |
Target: 5'- gCC-CUCUGAGCCcCCUUU-GCCCCCUg -3' miRNA: 3'- -GGuGAGACUCGGuGGAAGuUGGGGGG- -5' |
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29035 | 5' | -55.9 | NC_006146.1 | + | 29577 | 0.79 | 0.301548 |
Target: 5'- gCC-CUCUGAGCCcCCUUU-GCCCCCUg -3' miRNA: 3'- -GGuGAGACUCGGuGGAAGuUGGGGGG- -5' |
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29035 | 5' | -55.9 | NC_006146.1 | + | 20343 | 0.79 | 0.301548 |
Target: 5'- gCC-CUCUGAGCCcCCUUU-GCCCCCUg -3' miRNA: 3'- -GGuGAGACUCGGuGGAAGuUGGGGGG- -5' |
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29035 | 5' | -55.9 | NC_006146.1 | + | 26499 | 0.79 | 0.301548 |
Target: 5'- gCC-CUCUGAGCCcCCUUU-GCCCCCUg -3' miRNA: 3'- -GGuGAGACUCGGuGGAAGuUGGGGGG- -5' |
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29035 | 5' | -55.9 | NC_006146.1 | + | 121814 | 0.79 | 0.322711 |
Target: 5'- gCCGC-CUGAGCCACagccggagccUCAGCCCUCCu -3' miRNA: 3'- -GGUGaGACUCGGUGga--------AGUUGGGGGG- -5' |
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29035 | 5' | -55.9 | NC_006146.1 | + | 61132 | 0.77 | 0.393521 |
Target: 5'- uCCACguugacaaccaggugCUGAGCgGCCUgggAACCCCCCu -3' miRNA: 3'- -GGUGa--------------GACUCGgUGGAag-UUGGGGGG- -5' |
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29035 | 5' | -55.9 | NC_006146.1 | + | 72602 | 0.77 | 0.401052 |
Target: 5'- gCCACg--GAGCaCGCCcUCAGCCCCaCCg -3' miRNA: 3'- -GGUGagaCUCG-GUGGaAGUUGGGG-GG- -5' |
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29035 | 5' | -55.9 | NC_006146.1 | + | 122064 | 0.76 | 0.426803 |
Target: 5'- -gACUUUGaAGCCAUCUUC-ACCUCCCa -3' miRNA: 3'- ggUGAGAC-UCGGUGGAAGuUGGGGGG- -5' |
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29035 | 5' | -55.9 | NC_006146.1 | + | 4591 | 0.76 | 0.444505 |
Target: 5'- uCCGCucUCUGAGCCuagacccguGCUUUCAACUUCCCc -3' miRNA: 3'- -GGUG--AGACUCGG---------UGGAAGUUGGGGGG- -5' |
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29035 | 5' | -55.9 | NC_006146.1 | + | 42678 | 0.76 | 0.45351 |
Target: 5'- cCCGCggUGGGCUGCCUgaggcuggCAgaGCCCCCCa -3' miRNA: 3'- -GGUGagACUCGGUGGAa-------GU--UGGGGGG- -5' |
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29035 | 5' | -55.9 | NC_006146.1 | + | 2592 | 0.76 | 0.462612 |
Target: 5'- gCC-CUCggGAGCC-CCcUCAGCCCCCg -3' miRNA: 3'- -GGuGAGa-CUCGGuGGaAGUUGGGGGg -5' |
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29035 | 5' | -55.9 | NC_006146.1 | + | 3524 | 0.76 | 0.462612 |
Target: 5'- gCC-CUCggGAGCC-CCcUCAGCCCCCg -3' miRNA: 3'- -GGuGAGa-CUCGGuGGaAGUUGGGGGg -5' |
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29035 | 5' | -55.9 | NC_006146.1 | + | 1660 | 0.76 | 0.462612 |
Target: 5'- gCC-CUCggGAGCC-CCcUCAGCCCCCg -3' miRNA: 3'- -GGuGAGa-CUCGGuGGaAGUUGGGGGg -5' |
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29035 | 5' | -55.9 | NC_006146.1 | + | 729 | 0.76 | 0.462612 |
Target: 5'- gCC-CUCggGAGCC-CCcUCAGCCCCCg -3' miRNA: 3'- -GGuGAGa-CUCGGuGGaAGUUGGGGGg -5' |
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29035 | 5' | -55.9 | NC_006146.1 | + | 101217 | 0.75 | 0.490476 |
Target: 5'- uCCAC-CUG-GCaGCCUUCAgauaugccACCCCCCa -3' miRNA: 3'- -GGUGaGACuCGgUGGAAGU--------UGGGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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