miRNA display CGI


Results 21 - 40 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29035 5' -55.9 NC_006146.1 + 13783 0.66 0.939537
Target:  5'- gCCugUCcuccCCGCCUcccucccCGGCCCCCCu -3'
miRNA:   3'- -GGugAGacucGGUGGAa------GUUGGGGGG- -5'
29035 5' -55.9 NC_006146.1 + 29172 0.66 0.939537
Target:  5'- gCCugUCcuccCCGCCUcccucccCGGCCCCCCu -3'
miRNA:   3'- -GGugAGacucGGUGGAa------GUUGGGGGG- -5'
29035 5' -55.9 NC_006146.1 + 130863 0.66 0.939537
Target:  5'- aCACgccgGAGUCGgCUaCGGCCCCCa -3'
miRNA:   3'- gGUGaga-CUCGGUgGAaGUUGGGGGg -5'
29035 5' -55.9 NC_006146.1 + 26094 0.66 0.939537
Target:  5'- gCCugUCcuccCCGCCUcccucccCGGCCCCCCu -3'
miRNA:   3'- -GGugAGacucGGUGGAa------GUUGGGGGG- -5'
29035 5' -55.9 NC_006146.1 + 52645 0.66 0.937659
Target:  5'- gCCGCUCUGGcGCaugagggcguccaGCCUc--GCCCCCUc -3'
miRNA:   3'- -GGUGAGACU-CGg------------UGGAaguUGGGGGG- -5'
29035 5' -55.9 NC_006146.1 + 81010 0.66 0.934771
Target:  5'- aCCGCgaUCguucaucAGCCGCCc-CAaucGCCCCCCa -3'
miRNA:   3'- -GGUG--AGac-----UCGGUGGaaGU---UGGGGGG- -5'
29035 5' -55.9 NC_006146.1 + 115729 0.66 0.934771
Target:  5'- gCCGCagcCUGGGaCGCggUC-ACCCCCCu -3'
miRNA:   3'- -GGUGa--GACUCgGUGgaAGuUGGGGGG- -5'
29035 5' -55.9 NC_006146.1 + 102449 0.66 0.934771
Target:  5'- uCCAgUCgggGAgguagaagGCCAUCgUUCuguuuACCCCCCa -3'
miRNA:   3'- -GGUgAGa--CU--------CGGUGG-AAGu----UGGGGGG- -5'
29035 5' -55.9 NC_006146.1 + 140500 0.66 0.934771
Target:  5'- cUCAgUUUGcGCCACCUggCGGCCCUa- -3'
miRNA:   3'- -GGUgAGACuCGGUGGAa-GUUGGGGgg -5'
29035 5' -55.9 NC_006146.1 + 56652 0.66 0.9318
Target:  5'- aCCACUacgagcuggcccuccCUGAGgUGCCg--GGCCCCCUg -3'
miRNA:   3'- -GGUGA---------------GACUCgGUGGaagUUGGGGGG- -5'
29035 5' -55.9 NC_006146.1 + 48543 0.66 0.929772
Target:  5'- gUACUUuccaaggaauUGAGCCAUggugCUgagcUCGGCCCCCUg -3'
miRNA:   3'- gGUGAG----------ACUCGGUG----GA----AGUUGGGGGG- -5'
29035 5' -55.9 NC_006146.1 + 54068 0.66 0.929772
Target:  5'- cCCAC-CUG-GCCGCCgcgucccggCAcacguccuggacGCCCUCCa -3'
miRNA:   3'- -GGUGaGACuCGGUGGaa-------GU------------UGGGGGG- -5'
29035 5' -55.9 NC_006146.1 + 38335 0.66 0.929772
Target:  5'- gCCGCUCcGuGCCACCgaucUC-ACgCUCCg -3'
miRNA:   3'- -GGUGAGaCuCGGUGGa---AGuUGgGGGG- -5'
29035 5' -55.9 NC_006146.1 + 146993 0.66 0.929772
Target:  5'- ----gCUGGGCgcaAUCUUC-GCCCCCCa -3'
miRNA:   3'- ggugaGACUCGg--UGGAAGuUGGGGGG- -5'
29035 5' -55.9 NC_006146.1 + 78554 0.66 0.929772
Target:  5'- gCCAaugcGAGCCGCCccauaUCAGCUgCCCCa -3'
miRNA:   3'- -GGUgagaCUCGGUGGa----AGUUGG-GGGG- -5'
29035 5' -55.9 NC_006146.1 + 2337 0.66 0.929772
Target:  5'- gCACgcgCcGGGCC-CCgcggGACCCCCCc -3'
miRNA:   3'- gGUGa--GaCUCGGuGGaag-UUGGGGGG- -5'
29035 5' -55.9 NC_006146.1 + 1405 0.66 0.929772
Target:  5'- gCACgcgCcGGGCC-CCgcggGACCCCCCc -3'
miRNA:   3'- gGUGa--GaCUCGGuGGaag-UUGGGGGG- -5'
29035 5' -55.9 NC_006146.1 + 3269 0.66 0.929772
Target:  5'- gCACgcgCcGGGCC-CCgcggGACCCCCCc -3'
miRNA:   3'- gGUGa--GaCUCGGuGGaag-UUGGGGGG- -5'
29035 5' -55.9 NC_006146.1 + 133485 0.66 0.929772
Target:  5'- gUCAC-CgGGGCUACUUgcaccgCGGCCCCuCCg -3'
miRNA:   3'- -GGUGaGaCUCGGUGGAa-----GUUGGGG-GG- -5'
29035 5' -55.9 NC_006146.1 + 86079 0.66 0.929772
Target:  5'- gCugUCgGAGCCACUgccacaugUUCAGCagCCCa -3'
miRNA:   3'- gGugAGaCUCGGUGG--------AAGUUGggGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.