miRNA display CGI


Results 1 - 20 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29035 5' -55.9 NC_006146.1 + 402 0.66 0.939538
Target:  5'- gCCGCgcgCUGGGgguCCggggaAGCCCCCCg -3'
miRNA:   3'- -GGUGa--GACUCgguGGaag--UUGGGGGG- -5'
29035 5' -55.9 NC_006146.1 + 474 0.66 0.929772
Target:  5'- gCACgcgCcGGGCC-CCgcggGACCCCCCc -3'
miRNA:   3'- gGUGa--GaCUCGGuGGaag-UUGGGGGG- -5'
29035 5' -55.9 NC_006146.1 + 650 0.66 0.939538
Target:  5'- uCCuCUCguuaccccgGAGCaUGCCcgccCGACCCCCCg -3'
miRNA:   3'- -GGuGAGa--------CUCG-GUGGaa--GUUGGGGGG- -5'
29035 5' -55.9 NC_006146.1 + 729 0.76 0.462612
Target:  5'- gCC-CUCggGAGCC-CCcUCAGCCCCCg -3'
miRNA:   3'- -GGuGAGa-CUCGGuGGaAGUUGGGGGg -5'
29035 5' -55.9 NC_006146.1 + 1338 0.74 0.558222
Target:  5'- gCGCUC-GGGCC-CCggggaAGCCCCCCg -3'
miRNA:   3'- gGUGAGaCUCGGuGGaag--UUGGGGGG- -5'
29035 5' -55.9 NC_006146.1 + 1405 0.66 0.929772
Target:  5'- gCACgcgCcGGGCC-CCgcggGACCCCCCc -3'
miRNA:   3'- gGUGa--GaCUCGGuGGaag-UUGGGGGG- -5'
29035 5' -55.9 NC_006146.1 + 1581 0.66 0.939538
Target:  5'- uCCuCUCguuaccccgGAGCaUGCCcgccCGACCCCCCg -3'
miRNA:   3'- -GGuGAGa--------CUCG-GUGGaa--GUUGGGGGG- -5'
29035 5' -55.9 NC_006146.1 + 1660 0.76 0.462612
Target:  5'- gCC-CUCggGAGCC-CCcUCAGCCCCCg -3'
miRNA:   3'- -GGuGAGa-CUCGGuGGaAGUUGGGGGg -5'
29035 5' -55.9 NC_006146.1 + 1932 0.67 0.913385
Target:  5'- -gGCUCUacGAGCUAUUaUCGAaCCCCCg -3'
miRNA:   3'- ggUGAGA--CUCGGUGGaAGUUgGGGGG- -5'
29035 5' -55.9 NC_006146.1 + 2270 0.74 0.558222
Target:  5'- gCGCUC-GGGCC-CCggggaAGCCCCCCg -3'
miRNA:   3'- gGUGAGaCUCGGuGGaag--UUGGGGGG- -5'
29035 5' -55.9 NC_006146.1 + 2281 0.67 0.913385
Target:  5'- -gGCUUUGAgGUCACCggagccaGGCCCUCCu -3'
miRNA:   3'- ggUGAGACU-CGGUGGaag----UUGGGGGG- -5'
29035 5' -55.9 NC_006146.1 + 2337 0.66 0.929772
Target:  5'- gCACgcgCcGGGCC-CCgcggGACCCCCCc -3'
miRNA:   3'- gGUGa--GaCUCGGuGGaag-UUGGGGGG- -5'
29035 5' -55.9 NC_006146.1 + 2403 0.68 0.867222
Target:  5'- -gGCUCUGuuGGUC-CC--CGGCCCCCCg -3'
miRNA:   3'- ggUGAGAC--UCGGuGGaaGUUGGGGGG- -5'
29035 5' -55.9 NC_006146.1 + 2513 0.66 0.939538
Target:  5'- uCCuCUCguuaccccgGAGCaUGCCcgccCGACCCCCCg -3'
miRNA:   3'- -GGuGAGa--------CUCG-GUGGaa--GUUGGGGGG- -5'
29035 5' -55.9 NC_006146.1 + 2592 0.76 0.462612
Target:  5'- gCC-CUCggGAGCC-CCcUCAGCCCCCg -3'
miRNA:   3'- -GGuGAGa-CUCGGuGGaAGUUGGGGGg -5'
29035 5' -55.9 NC_006146.1 + 3202 0.74 0.558222
Target:  5'- gCGCUC-GGGCC-CCggggaAGCCCCCCg -3'
miRNA:   3'- gGUGAGaCUCGGuGGaag--UUGGGGGG- -5'
29035 5' -55.9 NC_006146.1 + 3269 0.66 0.929772
Target:  5'- gCACgcgCcGGGCC-CCgcggGACCCCCCc -3'
miRNA:   3'- gGUGa--GaCUCGGuGGaag-UUGGGGGG- -5'
29035 5' -55.9 NC_006146.1 + 3445 0.66 0.939538
Target:  5'- uCCuCUCguuaccccgGAGCaUGCCcgccCGACCCCCCg -3'
miRNA:   3'- -GGuGAGa--------CUCG-GUGGaa--GUUGGGGGG- -5'
29035 5' -55.9 NC_006146.1 + 3458 0.67 0.888327
Target:  5'- cCCGCUCgggGGGCUaaACUUcgUCAACgaccuggcuuCCCCCg -3'
miRNA:   3'- -GGUGAGa--CUCGG--UGGA--AGUUG----------GGGGG- -5'
29035 5' -55.9 NC_006146.1 + 3524 0.76 0.462612
Target:  5'- gCC-CUCggGAGCC-CCcUCAGCCCCCg -3'
miRNA:   3'- -GGuGAGa-CUCGGuGGaAGUUGGGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.