miRNA display CGI


Results 1 - 20 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29035 5' -55.9 NC_006146.1 + 78411 1.14 0.001617
Target:  5'- cCCACUCUGAGCCACCUUCAACCCCCCg -3'
miRNA:   3'- -GGUGAGACUCGGUGGAAGUUGGGGGG- -5'
29035 5' -55.9 NC_006146.1 + 18213 0.71 0.698575
Target:  5'- cCCAuCUCaGGGCC-CCUUCGgagACCUCCUg -3'
miRNA:   3'- -GGU-GAGaCUCGGuGGAAGU---UGGGGGG- -5'
29035 5' -55.9 NC_006146.1 + 24369 0.71 0.698575
Target:  5'- cCCAuCUCaGGGCC-CCUUCGgagACCUCCUg -3'
miRNA:   3'- -GGU-GAGaCUCGGuGGAAGU---UGGGGGG- -5'
29035 5' -55.9 NC_006146.1 + 75153 0.66 0.944074
Target:  5'- uCCAaaaccgGGGCCAacacCAGCCCCCCc -3'
miRNA:   3'- -GGUgaga--CUCGGUggaaGUUGGGGGG- -5'
29035 5' -55.9 NC_006146.1 + 17265 0.79 0.301548
Target:  5'- gCC-CUCUGAGCCcCCUUU-GCCCCCUg -3'
miRNA:   3'- -GGuGAGACUCGGuGGAAGuUGGGGGG- -5'
29035 5' -55.9 NC_006146.1 + 20343 0.79 0.301548
Target:  5'- gCC-CUCUGAGCCcCCUUU-GCCCCCUg -3'
miRNA:   3'- -GGuGAGACUCGGuGGAAGuUGGGGGG- -5'
29035 5' -55.9 NC_006146.1 + 26499 0.79 0.301548
Target:  5'- gCC-CUCUGAGCCcCCUUU-GCCCCCUg -3'
miRNA:   3'- -GGuGAGACUCGGuGGAAGuUGGGGGG- -5'
29035 5' -55.9 NC_006146.1 + 29577 0.79 0.301548
Target:  5'- gCC-CUCUGAGCCcCCUUU-GCCCCCUg -3'
miRNA:   3'- -GGuGAGACUCGGuGGAAGuUGGGGGG- -5'
29035 5' -55.9 NC_006146.1 + 42678 0.76 0.45351
Target:  5'- cCCGCggUGGGCUGCCUgaggcuggCAgaGCCCCCCa -3'
miRNA:   3'- -GGUGagACUCGGUGGAa-------GU--UGGGGGG- -5'
29035 5' -55.9 NC_006146.1 + 15135 0.71 0.698575
Target:  5'- cCCAuCUCaGGGCC-CCUUCGgagACCUCCUg -3'
miRNA:   3'- -GGU-GAGaCUCGGuGGAAGU---UGGGGGG- -5'
29035 5' -55.9 NC_006146.1 + 82544 0.75 0.509479
Target:  5'- uCCAgguuaUGGGCCuCCUUUAACCCCCUg -3'
miRNA:   3'- -GGUgag--ACUCGGuGGAAGUUGGGGGG- -5'
29035 5' -55.9 NC_006146.1 + 122064 0.76 0.426803
Target:  5'- -gACUUUGaAGCCAUCUUC-ACCUCCCa -3'
miRNA:   3'- ggUGAGAC-UCGGUGGAAGuUGGGGGG- -5'
29035 5' -55.9 NC_006146.1 + 138940 0.85 0.135161
Target:  5'- aUCACUCUGAGCCACUa--AGCCCCCa -3'
miRNA:   3'- -GGUGAGACUCGGUGGaagUUGGGGGg -5'
29035 5' -55.9 NC_006146.1 + 133214 0.72 0.62835
Target:  5'- cUCAC-CUGGGCUccuugccucguuGCCccCAGCCCCCCu -3'
miRNA:   3'- -GGUGaGACUCGG------------UGGaaGUUGGGGGG- -5'
29035 5' -55.9 NC_006146.1 + 35107 0.8 0.256372
Target:  5'- aUCACUUUGAGCCACUa--AGCCCCCg -3'
miRNA:   3'- -GGUGAGACUCGGUGGaagUUGGGGGg -5'
29035 5' -55.9 NC_006146.1 + 121814 0.79 0.322711
Target:  5'- gCCGC-CUGAGCCACagccggagccUCAGCCCUCCu -3'
miRNA:   3'- -GGUGaGACUCGGUGga--------AGUUGGGGGG- -5'
29035 5' -55.9 NC_006146.1 + 86034 0.72 0.668636
Target:  5'- gCCACUg-GAGCCGCUgucuccgUCGGCUCCuCCa -3'
miRNA:   3'- -GGUGAgaCUCGGUGGa------AGUUGGGG-GG- -5'
29035 5' -55.9 NC_006146.1 + 21291 0.71 0.698575
Target:  5'- cCCAuCUCaGGGCC-CCUUCGgagACCUCCUg -3'
miRNA:   3'- -GGU-GAGaCUCGGuGGAAGU---UGGGGGG- -5'
29035 5' -55.9 NC_006146.1 + 14187 0.79 0.301548
Target:  5'- gCC-CUCUGAGCCcCCUUU-GCCCCCUg -3'
miRNA:   3'- -GGuGAGACUCGGuGGAAGuUGGGGGG- -5'
29035 5' -55.9 NC_006146.1 + 23421 0.79 0.301548
Target:  5'- gCC-CUCUGAGCCcCCUUU-GCCCCCUg -3'
miRNA:   3'- -GGuGAGACUCGGuGGAAGuUGGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.