miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29036 3' -58.8 NC_006146.1 + 160605 0.66 0.814116
Target:  5'- uGCCCCcgAGGUcGGCCGCCUggcAUGcCa -3'
miRNA:   3'- -UGGGG--UCCGcCCGGUGGAaacUACaG- -5'
29036 3' -58.8 NC_006146.1 + 10979 0.66 0.814116
Target:  5'- cACCUaaagCAGGCGGcGCUGCCggUGAcggggGUCu -3'
miRNA:   3'- -UGGG----GUCCGCC-CGGUGGaaACUa----CAG- -5'
29036 3' -58.8 NC_006146.1 + 57180 0.66 0.805473
Target:  5'- cACCCCA-GUGGGCCcCCU--GGUGg- -3'
miRNA:   3'- -UGGGGUcCGCCCGGuGGAaaCUACag -5'
29036 3' -58.8 NC_006146.1 + 51744 0.66 0.805473
Target:  5'- cGCCCCgAGGUGGGCUuCUUgugcgGGcUGUCc -3'
miRNA:   3'- -UGGGG-UCCGCCCGGuGGAaa---CU-ACAG- -5'
29036 3' -58.8 NC_006146.1 + 66874 0.66 0.805473
Target:  5'- gGCCCCgaAGGUGGuGCUGCUggaggUGcUGUCg -3'
miRNA:   3'- -UGGGG--UCCGCC-CGGUGGaa---ACuACAG- -5'
29036 3' -58.8 NC_006146.1 + 33864 0.66 0.805473
Target:  5'- aACCCCAGGCccccacccGGCCuCCUccccggGGUGUg -3'
miRNA:   3'- -UGGGGUCCGc-------CCGGuGGAaa----CUACAg -5'
29036 3' -58.8 NC_006146.1 + 64021 0.66 0.805473
Target:  5'- cUUCUAGGCGGGCCGgCUugugcUUGuacUGUCc -3'
miRNA:   3'- uGGGGUCCGCCCGGUgGA-----AACu--ACAG- -5'
29036 3' -58.8 NC_006146.1 + 135414 0.66 0.78774
Target:  5'- aACCCCAGGCuGGUgGCU---GGUGUa -3'
miRNA:   3'- -UGGGGUCCGcCCGgUGGaaaCUACAg -5'
29036 3' -58.8 NC_006146.1 + 157488 0.66 0.78774
Target:  5'- --aCCGGGCGGGCCuugcagACCUggcUGAggcaGUCc -3'
miRNA:   3'- uggGGUCCGCCCGG------UGGAa--ACUa---CAG- -5'
29036 3' -58.8 NC_006146.1 + 60865 0.66 0.778666
Target:  5'- uAUCCCGGGggucaCGaGGCCAUCUUUGAUc-- -3'
miRNA:   3'- -UGGGGUCC-----GC-CCGGUGGAAACUAcag -5'
29036 3' -58.8 NC_006146.1 + 41261 0.66 0.778666
Target:  5'- gACCCCAGaCGGaGCCgACCgg-GgcGUCa -3'
miRNA:   3'- -UGGGGUCcGCC-CGG-UGGaaaCuaCAG- -5'
29036 3' -58.8 NC_006146.1 + 129848 0.67 0.769464
Target:  5'- cACCCCgAGGCccccaGGGCCGCCgcgGAc--- -3'
miRNA:   3'- -UGGGG-UCCG-----CCCGGUGGaaaCUacag -5'
29036 3' -58.8 NC_006146.1 + 114247 0.67 0.769464
Target:  5'- cACCUCAGGgaGGGCCAgCUcguagUGGUGcCc -3'
miRNA:   3'- -UGGGGUCCg-CCCGGUgGAa----ACUACaG- -5'
29036 3' -58.8 NC_006146.1 + 167163 0.67 0.76761
Target:  5'- cACCCCGGGCugaaGGGCCACgCggcccccagaGAcccUGUCu -3'
miRNA:   3'- -UGGGGUCCG----CCCGGUG-Gaaa-------CU---ACAG- -5'
29036 3' -58.8 NC_006146.1 + 21859 0.67 0.760144
Target:  5'- -gCCCAGGCcaGGCCACCUUaGAc--- -3'
miRNA:   3'- ugGGGUCCGc-CCGGUGGAAaCUacag -5'
29036 3' -58.8 NC_006146.1 + 15703 0.67 0.760144
Target:  5'- -gCCCAGGCcaGGCCACCUUaGAc--- -3'
miRNA:   3'- ugGGGUCCGc-CCGGUGGAAaCUacag -5'
29036 3' -58.8 NC_006146.1 + 28014 0.67 0.760144
Target:  5'- -gCCCAGGCcaGGCCACCUUaGAc--- -3'
miRNA:   3'- ugGGGUCCGc-CCGGUGGAAaCUacag -5'
29036 3' -58.8 NC_006146.1 + 18781 0.67 0.760144
Target:  5'- -gCCCAGGCcaGGCCACCUUaGAc--- -3'
miRNA:   3'- ugGGGUCCGc-CCGGUGGAAaCUacag -5'
29036 3' -58.8 NC_006146.1 + 12624 0.67 0.760144
Target:  5'- -gCCCAGGCcaGGCCACCUUaGAc--- -3'
miRNA:   3'- ugGGGUCCGc-CCGGUGGAAaCUacag -5'
29036 3' -58.8 NC_006146.1 + 83743 0.67 0.757327
Target:  5'- aACCCCcuGUGGGCCgugagcagugggugGCCUggUGGgagGUCg -3'
miRNA:   3'- -UGGGGucCGCCCGG--------------UGGAa-ACUa--CAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.