Results 1 - 20 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29036 | 3' | -58.8 | NC_006146.1 | + | 66874 | 0.66 | 0.805473 |
Target: 5'- gGCCCCgaAGGUGGuGCUGCUggaggUGcUGUCg -3' miRNA: 3'- -UGGGG--UCCGCC-CGGUGGaa---ACuACAG- -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 51744 | 0.66 | 0.805473 |
Target: 5'- cGCCCCgAGGUGGGCUuCUUgugcgGGcUGUCc -3' miRNA: 3'- -UGGGG-UCCGCCCGGuGGAaa---CU-ACAG- -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 157488 | 0.66 | 0.78774 |
Target: 5'- --aCCGGGCGGGCCuugcagACCUggcUGAggcaGUCc -3' miRNA: 3'- uggGGUCCGCCCGG------UGGAa--ACUa---CAG- -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 10979 | 0.66 | 0.814116 |
Target: 5'- cACCUaaagCAGGCGGcGCUGCCggUGAcggggGUCu -3' miRNA: 3'- -UGGG----GUCCGCC-CGGUGGaaACUa----CAG- -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 57180 | 0.66 | 0.805473 |
Target: 5'- cACCCCA-GUGGGCCcCCU--GGUGg- -3' miRNA: 3'- -UGGGGUcCGCCCGGuGGAaaCUACag -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 160605 | 0.66 | 0.814116 |
Target: 5'- uGCCCCcgAGGUcGGCCGCCUggcAUGcCa -3' miRNA: 3'- -UGGGG--UCCGcCCGGUGGAaacUACaG- -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 33864 | 0.66 | 0.805473 |
Target: 5'- aACCCCAGGCccccacccGGCCuCCUccccggGGUGUg -3' miRNA: 3'- -UGGGGUCCGc-------CCGGuGGAaa----CUACAg -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 64021 | 0.66 | 0.805473 |
Target: 5'- cUUCUAGGCGGGCCGgCUugugcUUGuacUGUCc -3' miRNA: 3'- uGGGGUCCGCCCGGUgGA-----AACu--ACAG- -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 41261 | 0.66 | 0.778666 |
Target: 5'- gACCCCAGaCGGaGCCgACCgg-GgcGUCa -3' miRNA: 3'- -UGGGGUCcGCC-CGG-UGGaaaCuaCAG- -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 60865 | 0.66 | 0.778666 |
Target: 5'- uAUCCCGGGggucaCGaGGCCAUCUUUGAUc-- -3' miRNA: 3'- -UGGGGUCC-----GC-CCGGUGGAAACUAcag -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 135414 | 0.66 | 0.78774 |
Target: 5'- aACCCCAGGCuGGUgGCU---GGUGUa -3' miRNA: 3'- -UGGGGUCCGcCCGgUGGaaaCUACAg -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 62419 | 0.67 | 0.731561 |
Target: 5'- aACCCCGGGUGGGCUGgCUgaaGcgGcCu -3' miRNA: 3'- -UGGGGUCCGCCCGGUgGAaa-CuaCaG- -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 78580 | 0.67 | 0.731561 |
Target: 5'- uGCCCCAGGcCGGGcCCGCCc-------- -3' miRNA: 3'- -UGGGGUCC-GCCC-GGUGGaaacuacag -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 78700 | 0.67 | 0.721855 |
Target: 5'- aGCCCCAGGcCGGGcCCGCCc-------- -3' miRNA: 3'- -UGGGGUCC-GCCC-GGUGGaaacuacag -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 78848 | 0.67 | 0.721855 |
Target: 5'- aGCCCCAGGcCGGGcCCGCCc-------- -3' miRNA: 3'- -UGGGGUCC-GCCC-GGUGGaaacuacag -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 78790 | 0.67 | 0.721855 |
Target: 5'- aGCCCCAGGcCGGGcCCGCCc-------- -3' miRNA: 3'- -UGGGGUCC-GCCC-GGUGGaaacuacag -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 12624 | 0.67 | 0.760144 |
Target: 5'- -gCCCAGGCcaGGCCACCUUaGAc--- -3' miRNA: 3'- ugGGGUCCGc-CCGGUGGAAaCUacag -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 78730 | 0.67 | 0.721855 |
Target: 5'- aGCCCCAGGcCGGGcCCGCCc-------- -3' miRNA: 3'- -UGGGGUCC-GCCC-GGUGGaaacuacag -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 167163 | 0.67 | 0.76761 |
Target: 5'- cACCCCGGGCugaaGGGCCACgCggcccccagaGAcccUGUCu -3' miRNA: 3'- -UGGGGUCCG----CCCGGUG-Gaaa-------CU---ACAG- -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 83743 | 0.67 | 0.757327 |
Target: 5'- aACCCCcuGUGGGCCgugagcagugggugGCCUggUGGgagGUCg -3' miRNA: 3'- -UGGGGucCGCCCGG--------------UGGAa-ACUa--CAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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