Results 1 - 20 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29036 | 3' | -58.8 | NC_006146.1 | + | 78461 | 1.09 | 0.001695 |
Target: 5'- gACCCCAGGCGGGCCACCUUUGAUGUCu -3' miRNA: 3'- -UGGGGUCCGCCCGGUGGAAACUACAG- -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 123522 | 0.77 | 0.241317 |
Target: 5'- gACCCCAGGCGGGUCGCg---GGUGg- -3' miRNA: 3'- -UGGGGUCCGCCCGGUGgaaaCUACag -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 74425 | 0.75 | 0.297665 |
Target: 5'- uGCUCCAGGUGGGCCAg----GAUGUCc -3' miRNA: 3'- -UGGGGUCCGCCCGGUggaaaCUACAG- -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 104932 | 0.75 | 0.333147 |
Target: 5'- cGCCCCAGGCcaucacGGUCACCUUuaUGA-GUCa -3' miRNA: 3'- -UGGGGUCCGc-----CCGGUGGAA--ACUaCAG- -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 78908 | 0.74 | 0.348183 |
Target: 5'- aGCCCCAGGcCGGGCCcGCCagugUGAUuGUg -3' miRNA: 3'- -UGGGGUCC-GCCCGG-UGGaa--ACUA-CAg -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 70691 | 0.74 | 0.363698 |
Target: 5'- -aCUCAGGCcacGGGCCGCC--UGGUGUCu -3' miRNA: 3'- ugGGGUCCG---CCCGGUGGaaACUACAG- -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 78820 | 0.74 | 0.363698 |
Target: 5'- aGCCCCAGGcCGGGCCGCCc-------- -3' miRNA: 3'- -UGGGGUCC-GCCCGGUGGaaacuacag -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 117793 | 0.74 | 0.363698 |
Target: 5'- cCCCCGGGcCGGGCCGCCUccgGAc--- -3' miRNA: 3'- uGGGGUCC-GCCCGGUGGAaa-CUacag -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 137505 | 0.73 | 0.396137 |
Target: 5'- -gCCCAGGCGGGCCACCc-------- -3' miRNA: 3'- ugGGGUCCGCCCGGUGGaaacuacag -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 158059 | 0.73 | 0.412185 |
Target: 5'- cGCCCCAGGCGccuccucggguccGGCCGCCg--GAgggcucuaacccUGUCu -3' miRNA: 3'- -UGGGGUCCGC-------------CCGGUGGaaaCU------------ACAG- -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 132080 | 0.72 | 0.448144 |
Target: 5'- uGCCCCAGGCucaGGGCCugGCUgcaGAUGUg -3' miRNA: 3'- -UGGGGUCCG---CCCGG--UGGaaaCUACAg -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 153199 | 0.71 | 0.493292 |
Target: 5'- cCCCCAGGCgcuuggccgccacGGGCCGCCcguaGAUGcCg -3' miRNA: 3'- uGGGGUCCG-------------CCCGGUGGaaa-CUACaG- -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 92594 | 0.71 | 0.494236 |
Target: 5'- uGCCCCAauccGGCGGGCuCAUCUUcuucaAUGUCu -3' miRNA: 3'- -UGGGGU----CCGCCCG-GUGGAAac---UACAG- -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 10111 | 0.71 | 0.532607 |
Target: 5'- uCCCUgcuggAGGauuucaaGGGCUACCUggGAUGUCa -3' miRNA: 3'- uGGGG-----UCCg------CCCGGUGGAaaCUACAG- -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 120559 | 0.7 | 0.542372 |
Target: 5'- uCCCCAGGCuGGCCgagGCCgcgGAUGg- -3' miRNA: 3'- uGGGGUCCGcCCGG---UGGaaaCUACag -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 74263 | 0.7 | 0.542372 |
Target: 5'- uCCCCGGGCuGGCCaaagaGCCggUUGcgGUCc -3' miRNA: 3'- uGGGGUCCGcCCGG-----UGGa-AACuaCAG- -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 60961 | 0.7 | 0.552195 |
Target: 5'- gGCCCgGGGgugggGGGUCACCUUggugGAUGUg -3' miRNA: 3'- -UGGGgUCCg----CCCGGUGGAAa---CUACAg -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 110022 | 0.7 | 0.581958 |
Target: 5'- gGCCCCAGGCcGGUCugCaggGGcUGUCa -3' miRNA: 3'- -UGGGGUCCGcCCGGugGaaaCU-ACAG- -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 139161 | 0.7 | 0.581958 |
Target: 5'- cCCCCGGGgGGGC-GCCUgUGAggcggcuguuguUGUCa -3' miRNA: 3'- uGGGGUCCgCCCGgUGGAaACU------------ACAG- -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 44265 | 0.7 | 0.591958 |
Target: 5'- uGCCCCu-GCGGGCC-CCgg-GGUGUg -3' miRNA: 3'- -UGGGGucCGCCCGGuGGaaaCUACAg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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