miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29036 3' -58.8 NC_006146.1 + 57332 0.67 0.741184
Target:  5'- gGCUCUcuggGGGCgGGGCC-CCg--GGUGUCg -3'
miRNA:   3'- -UGGGG----UCCG-CCCGGuGGaaaCUACAG- -5'
29036 3' -58.8 NC_006146.1 + 62419 0.67 0.731561
Target:  5'- aACCCCGGGUGGGCUGgCUgaaGcgGcCu -3'
miRNA:   3'- -UGGGGUCCGCCCGGUgGAaa-CuaCaG- -5'
29036 3' -58.8 NC_006146.1 + 78580 0.67 0.731561
Target:  5'- uGCCCCAGGcCGGGcCCGCCc-------- -3'
miRNA:   3'- -UGGGGUCC-GCCC-GGUGGaaacuacag -5'
29036 3' -58.8 NC_006146.1 + 78640 0.67 0.721855
Target:  5'- aGCCCCAGGcCGGGcCCGCCc-------- -3'
miRNA:   3'- -UGGGGUCC-GCCC-GGUGGaaacuacag -5'
29036 3' -58.8 NC_006146.1 + 78760 0.67 0.721855
Target:  5'- aGCCCCAGGcCGGGcCCGCCc-------- -3'
miRNA:   3'- -UGGGGUCC-GCCC-GGUGGaaacuacag -5'
29036 3' -58.8 NC_006146.1 + 78700 0.67 0.721855
Target:  5'- aGCCCCAGGcCGGGcCCGCCc-------- -3'
miRNA:   3'- -UGGGGUCC-GCCC-GGUGGaaacuacag -5'
29036 3' -58.8 NC_006146.1 + 78730 0.67 0.721855
Target:  5'- aGCCCCAGGcCGGGcCCGCCc-------- -3'
miRNA:   3'- -UGGGGUCC-GCCC-GGUGGaaacuacag -5'
29036 3' -58.8 NC_006146.1 + 78790 0.67 0.721855
Target:  5'- aGCCCCAGGcCGGGcCCGCCc-------- -3'
miRNA:   3'- -UGGGGUCC-GCCC-GGUGGaaacuacag -5'
29036 3' -58.8 NC_006146.1 + 78610 0.67 0.721855
Target:  5'- aGCCCCAGGcCGGGcCCGCCc-------- -3'
miRNA:   3'- -UGGGGUCC-GCCC-GGUGGaaacuacag -5'
29036 3' -58.8 NC_006146.1 + 78878 0.67 0.721855
Target:  5'- aGCCCCAGGcCGGGcCCGCCc-------- -3'
miRNA:   3'- -UGGGGUCC-GCCC-GGUGGaaacuacag -5'
29036 3' -58.8 NC_006146.1 + 78848 0.67 0.721855
Target:  5'- aGCCCCAGGcCGGGcCCGCCc-------- -3'
miRNA:   3'- -UGGGGUCC-GCCC-GGUGGaaacuacag -5'
29036 3' -58.8 NC_006146.1 + 91257 0.67 0.721855
Target:  5'- uCCCCAuGGgGGGCuCGCCggccugUGAcccUGUCc -3'
miRNA:   3'- uGGGGU-CCgCCCG-GUGGaa----ACU---ACAG- -5'
29036 3' -58.8 NC_006146.1 + 48642 0.68 0.712074
Target:  5'- gGCUCCGGGCGGGUgcccagCGCCUUcUGAa--- -3'
miRNA:   3'- -UGGGGUCCGCCCG------GUGGAA-ACUacag -5'
29036 3' -58.8 NC_006146.1 + 150782 0.68 0.702227
Target:  5'- gGCCCCcagcAGGUgccGGGCCACC----GUGUCc -3'
miRNA:   3'- -UGGGG----UCCG---CCCGGUGGaaacUACAG- -5'
29036 3' -58.8 NC_006146.1 + 4327 0.68 0.692323
Target:  5'- gAUCCaGGGCGGGUCGCuCUUUGAg--- -3'
miRNA:   3'- -UGGGgUCCGCCCGGUG-GAAACUacag -5'
29036 3' -58.8 NC_006146.1 + 104438 0.68 0.682371
Target:  5'- uGCCCCAcauGGUGGGggugaaauCCACCag-GAUGUUg -3'
miRNA:   3'- -UGGGGU---CCGCCC--------GGUGGaaaCUACAG- -5'
29036 3' -58.8 NC_006146.1 + 114169 0.68 0.662353
Target:  5'- gGCCCUGGGCagcaGGGUCACCa-UGAUG-Ca -3'
miRNA:   3'- -UGGGGUCCG----CCCGGUGGaaACUACaG- -5'
29036 3' -58.8 NC_006146.1 + 119132 0.69 0.652305
Target:  5'- gGCUCUGGGCagagaGGCCACCUUUuacgcGUGUCg -3'
miRNA:   3'- -UGGGGUCCGc----CCGGUGGAAAc----UACAG- -5'
29036 3' -58.8 NC_006146.1 + 52276 0.69 0.652305
Target:  5'- gGCCCCGGGCGcccCCACguaCUggagGAUGUCa -3'
miRNA:   3'- -UGGGGUCCGCcc-GGUG---GAaa--CUACAG- -5'
29036 3' -58.8 NC_006146.1 + 44265 0.7 0.591958
Target:  5'- uGCCCCu-GCGGGCC-CCgg-GGUGUg -3'
miRNA:   3'- -UGGGGucCGCCCGGuGGaaaCUACAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.