miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29036 3' -58.8 NC_006146.1 + 4327 0.68 0.692323
Target:  5'- gAUCCaGGGCGGGUCGCuCUUUGAg--- -3'
miRNA:   3'- -UGGGgUCCGCCCGGUG-GAAACUacag -5'
29036 3' -58.8 NC_006146.1 + 10111 0.71 0.532607
Target:  5'- uCCCUgcuggAGGauuucaaGGGCUACCUggGAUGUCa -3'
miRNA:   3'- uGGGG-----UCCg------CCCGGUGGAaaCUACAG- -5'
29036 3' -58.8 NC_006146.1 + 10979 0.66 0.814116
Target:  5'- cACCUaaagCAGGCGGcGCUGCCggUGAcggggGUCu -3'
miRNA:   3'- -UGGG----GUCCGCC-CGGUGGaaACUa----CAG- -5'
29036 3' -58.8 NC_006146.1 + 12624 0.67 0.760144
Target:  5'- -gCCCAGGCcaGGCCACCUUaGAc--- -3'
miRNA:   3'- ugGGGUCCGc-CCGGUGGAAaCUacag -5'
29036 3' -58.8 NC_006146.1 + 15703 0.67 0.760144
Target:  5'- -gCCCAGGCcaGGCCACCUUaGAc--- -3'
miRNA:   3'- ugGGGUCCGc-CCGGUGGAAaCUacag -5'
29036 3' -58.8 NC_006146.1 + 18781 0.67 0.760144
Target:  5'- -gCCCAGGCcaGGCCACCUUaGAc--- -3'
miRNA:   3'- ugGGGUCCGc-CCGGUGGAAaCUacag -5'
29036 3' -58.8 NC_006146.1 + 21859 0.67 0.760144
Target:  5'- -gCCCAGGCcaGGCCACCUUaGAc--- -3'
miRNA:   3'- ugGGGUCCGc-CCGGUGGAAaCUacag -5'
29036 3' -58.8 NC_006146.1 + 28014 0.67 0.760144
Target:  5'- -gCCCAGGCcaGGCCACCUUaGAc--- -3'
miRNA:   3'- ugGGGUCCGc-CCGGUGGAAaCUacag -5'
29036 3' -58.8 NC_006146.1 + 33864 0.66 0.805473
Target:  5'- aACCCCAGGCccccacccGGCCuCCUccccggGGUGUg -3'
miRNA:   3'- -UGGGGUCCGc-------CCGGuGGAaa----CUACAg -5'
29036 3' -58.8 NC_006146.1 + 41261 0.66 0.778666
Target:  5'- gACCCCAGaCGGaGCCgACCgg-GgcGUCa -3'
miRNA:   3'- -UGGGGUCcGCC-CGG-UGGaaaCuaCAG- -5'
29036 3' -58.8 NC_006146.1 + 44265 0.7 0.591958
Target:  5'- uGCCCCu-GCGGGCC-CCgg-GGUGUg -3'
miRNA:   3'- -UGGGGucCGCCCGGuGGaaaCUACAg -5'
29036 3' -58.8 NC_006146.1 + 48642 0.68 0.712074
Target:  5'- gGCUCCGGGCGGGUgcccagCGCCUUcUGAa--- -3'
miRNA:   3'- -UGGGGUCCGCCCG------GUGGAA-ACUacag -5'
29036 3' -58.8 NC_006146.1 + 51744 0.66 0.805473
Target:  5'- cGCCCCgAGGUGGGCUuCUUgugcgGGcUGUCc -3'
miRNA:   3'- -UGGGG-UCCGCCCGGuGGAaa---CU-ACAG- -5'
29036 3' -58.8 NC_006146.1 + 52276 0.69 0.652305
Target:  5'- gGCCCCGGGCGcccCCACguaCUggagGAUGUCa -3'
miRNA:   3'- -UGGGGUCCGCcc-GGUG---GAaa--CUACAG- -5'
29036 3' -58.8 NC_006146.1 + 57180 0.66 0.805473
Target:  5'- cACCCCA-GUGGGCCcCCU--GGUGg- -3'
miRNA:   3'- -UGGGGUcCGCCCGGuGGAaaCUACag -5'
29036 3' -58.8 NC_006146.1 + 57332 0.67 0.741184
Target:  5'- gGCUCUcuggGGGCgGGGCC-CCg--GGUGUCg -3'
miRNA:   3'- -UGGGG----UCCG-CCCGGuGGaaaCUACAG- -5'
29036 3' -58.8 NC_006146.1 + 60865 0.66 0.778666
Target:  5'- uAUCCCGGGggucaCGaGGCCAUCUUUGAUc-- -3'
miRNA:   3'- -UGGGGUCC-----GC-CCGGUGGAAACUAcag -5'
29036 3' -58.8 NC_006146.1 + 60961 0.7 0.552195
Target:  5'- gGCCCgGGGgugggGGGUCACCUUggugGAUGUg -3'
miRNA:   3'- -UGGGgUCCg----CCCGGUGGAAa---CUACAg -5'
29036 3' -58.8 NC_006146.1 + 62419 0.67 0.731561
Target:  5'- aACCCCGGGUGGGCUGgCUgaaGcgGcCu -3'
miRNA:   3'- -UGGGGUCCGCCCGGUgGAaa-CuaCaG- -5'
29036 3' -58.8 NC_006146.1 + 64021 0.66 0.805473
Target:  5'- cUUCUAGGCGGGCCGgCUugugcUUGuacUGUCc -3'
miRNA:   3'- uGGGGUCCGCCCGGUgGA-----AACu--ACAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.