Results 21 - 40 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29036 | 3' | -58.8 | NC_006146.1 | + | 66874 | 0.66 | 0.805473 |
Target: 5'- gGCCCCgaAGGUGGuGCUGCUggaggUGcUGUCg -3' miRNA: 3'- -UGGGG--UCCGCC-CGGUGGaa---ACuACAG- -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 70691 | 0.74 | 0.363698 |
Target: 5'- -aCUCAGGCcacGGGCCGCC--UGGUGUCu -3' miRNA: 3'- ugGGGUCCG---CCCGGUGGaaACUACAG- -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 74263 | 0.7 | 0.542372 |
Target: 5'- uCCCCGGGCuGGCCaaagaGCCggUUGcgGUCc -3' miRNA: 3'- uGGGGUCCGcCCGG-----UGGa-AACuaCAG- -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 74425 | 0.75 | 0.297665 |
Target: 5'- uGCUCCAGGUGGGCCAg----GAUGUCc -3' miRNA: 3'- -UGGGGUCCGCCCGGUggaaaCUACAG- -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 78461 | 1.09 | 0.001695 |
Target: 5'- gACCCCAGGCGGGCCACCUUUGAUGUCu -3' miRNA: 3'- -UGGGGUCCGCCCGGUGGAAACUACAG- -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 78580 | 0.67 | 0.731561 |
Target: 5'- uGCCCCAGGcCGGGcCCGCCc-------- -3' miRNA: 3'- -UGGGGUCC-GCCC-GGUGGaaacuacag -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 78610 | 0.67 | 0.721855 |
Target: 5'- aGCCCCAGGcCGGGcCCGCCc-------- -3' miRNA: 3'- -UGGGGUCC-GCCC-GGUGGaaacuacag -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 78640 | 0.67 | 0.721855 |
Target: 5'- aGCCCCAGGcCGGGcCCGCCc-------- -3' miRNA: 3'- -UGGGGUCC-GCCC-GGUGGaaacuacag -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 78700 | 0.67 | 0.721855 |
Target: 5'- aGCCCCAGGcCGGGcCCGCCc-------- -3' miRNA: 3'- -UGGGGUCC-GCCC-GGUGGaaacuacag -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 78730 | 0.67 | 0.721855 |
Target: 5'- aGCCCCAGGcCGGGcCCGCCc-------- -3' miRNA: 3'- -UGGGGUCC-GCCC-GGUGGaaacuacag -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 78760 | 0.67 | 0.721855 |
Target: 5'- aGCCCCAGGcCGGGcCCGCCc-------- -3' miRNA: 3'- -UGGGGUCC-GCCC-GGUGGaaacuacag -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 78790 | 0.67 | 0.721855 |
Target: 5'- aGCCCCAGGcCGGGcCCGCCc-------- -3' miRNA: 3'- -UGGGGUCC-GCCC-GGUGGaaacuacag -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 78820 | 0.74 | 0.363698 |
Target: 5'- aGCCCCAGGcCGGGCCGCCc-------- -3' miRNA: 3'- -UGGGGUCC-GCCCGGUGGaaacuacag -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 78848 | 0.67 | 0.721855 |
Target: 5'- aGCCCCAGGcCGGGcCCGCCc-------- -3' miRNA: 3'- -UGGGGUCC-GCCC-GGUGGaaacuacag -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 78878 | 0.67 | 0.721855 |
Target: 5'- aGCCCCAGGcCGGGcCCGCCc-------- -3' miRNA: 3'- -UGGGGUCC-GCCC-GGUGGaaacuacag -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 78908 | 0.74 | 0.348183 |
Target: 5'- aGCCCCAGGcCGGGCCcGCCagugUGAUuGUg -3' miRNA: 3'- -UGGGGUCC-GCCCGG-UGGaa--ACUA-CAg -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 83743 | 0.67 | 0.757327 |
Target: 5'- aACCCCcuGUGGGCCgugagcagugggugGCCUggUGGgagGUCg -3' miRNA: 3'- -UGGGGucCGCCCGG--------------UGGAa-ACUa--CAG- -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 91257 | 0.67 | 0.721855 |
Target: 5'- uCCCCAuGGgGGGCuCGCCggccugUGAcccUGUCc -3' miRNA: 3'- uGGGGU-CCgCCCG-GUGGaa----ACU---ACAG- -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 92594 | 0.71 | 0.494236 |
Target: 5'- uGCCCCAauccGGCGGGCuCAUCUUcuucaAUGUCu -3' miRNA: 3'- -UGGGGU----CCGCCCG-GUGGAAac---UACAG- -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 104438 | 0.68 | 0.682371 |
Target: 5'- uGCCCCAcauGGUGGGggugaaauCCACCag-GAUGUUg -3' miRNA: 3'- -UGGGGU---CCGCCC--------GGUGGaaaCUACAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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