miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29036 3' -58.8 NC_006146.1 + 167163 0.67 0.76761
Target:  5'- cACCCCGGGCugaaGGGCCACgCggcccccagaGAcccUGUCu -3'
miRNA:   3'- -UGGGGUCCG----CCCGGUG-Gaaa-------CU---ACAG- -5'
29036 3' -58.8 NC_006146.1 + 160605 0.66 0.814116
Target:  5'- uGCCCCcgAGGUcGGCCGCCUggcAUGcCa -3'
miRNA:   3'- -UGGGG--UCCGcCCGGUGGAaacUACaG- -5'
29036 3' -58.8 NC_006146.1 + 158059 0.73 0.412185
Target:  5'- cGCCCCAGGCGccuccucggguccGGCCGCCg--GAgggcucuaacccUGUCu -3'
miRNA:   3'- -UGGGGUCCGC-------------CCGGUGGaaaCU------------ACAG- -5'
29036 3' -58.8 NC_006146.1 + 157488 0.66 0.78774
Target:  5'- --aCCGGGCGGGCCuugcagACCUggcUGAggcaGUCc -3'
miRNA:   3'- uggGGUCCGCCCGG------UGGAa--ACUa---CAG- -5'
29036 3' -58.8 NC_006146.1 + 153199 0.71 0.493292
Target:  5'- cCCCCAGGCgcuuggccgccacGGGCCGCCcguaGAUGcCg -3'
miRNA:   3'- uGGGGUCCG-------------CCCGGUGGaaa-CUACaG- -5'
29036 3' -58.8 NC_006146.1 + 150782 0.68 0.702227
Target:  5'- gGCCCCcagcAGGUgccGGGCCACC----GUGUCc -3'
miRNA:   3'- -UGGGG----UCCG---CCCGGUGGaaacUACAG- -5'
29036 3' -58.8 NC_006146.1 + 139161 0.7 0.581958
Target:  5'- cCCCCGGGgGGGC-GCCUgUGAggcggcuguuguUGUCa -3'
miRNA:   3'- uGGGGUCCgCCCGgUGGAaACU------------ACAG- -5'
29036 3' -58.8 NC_006146.1 + 137505 0.73 0.396137
Target:  5'- -gCCCAGGCGGGCCACCc-------- -3'
miRNA:   3'- ugGGGUCCGCCCGGUGGaaacuacag -5'
29036 3' -58.8 NC_006146.1 + 135414 0.66 0.78774
Target:  5'- aACCCCAGGCuGGUgGCU---GGUGUa -3'
miRNA:   3'- -UGGGGUCCGcCCGgUGGaaaCUACAg -5'
29036 3' -58.8 NC_006146.1 + 132080 0.72 0.448144
Target:  5'- uGCCCCAGGCucaGGGCCugGCUgcaGAUGUg -3'
miRNA:   3'- -UGGGGUCCG---CCCGG--UGGaaaCUACAg -5'
29036 3' -58.8 NC_006146.1 + 129848 0.67 0.769464
Target:  5'- cACCCCgAGGCccccaGGGCCGCCgcgGAc--- -3'
miRNA:   3'- -UGGGG-UCCG-----CCCGGUGGaaaCUacag -5'
29036 3' -58.8 NC_006146.1 + 123522 0.77 0.241317
Target:  5'- gACCCCAGGCGGGUCGCg---GGUGg- -3'
miRNA:   3'- -UGGGGUCCGCCCGGUGgaaaCUACag -5'
29036 3' -58.8 NC_006146.1 + 120559 0.7 0.542372
Target:  5'- uCCCCAGGCuGGCCgagGCCgcgGAUGg- -3'
miRNA:   3'- uGGGGUCCGcCCGG---UGGaaaCUACag -5'
29036 3' -58.8 NC_006146.1 + 119132 0.69 0.652305
Target:  5'- gGCUCUGGGCagagaGGCCACCUUUuacgcGUGUCg -3'
miRNA:   3'- -UGGGGUCCGc----CCGGUGGAAAc----UACAG- -5'
29036 3' -58.8 NC_006146.1 + 117793 0.74 0.363698
Target:  5'- cCCCCGGGcCGGGCCGCCUccgGAc--- -3'
miRNA:   3'- uGGGGUCC-GCCCGGUGGAaa-CUacag -5'
29036 3' -58.8 NC_006146.1 + 114247 0.67 0.769464
Target:  5'- cACCUCAGGgaGGGCCAgCUcguagUGGUGcCc -3'
miRNA:   3'- -UGGGGUCCg-CCCGGUgGAa----ACUACaG- -5'
29036 3' -58.8 NC_006146.1 + 114169 0.68 0.662353
Target:  5'- gGCCCUGGGCagcaGGGUCACCa-UGAUG-Ca -3'
miRNA:   3'- -UGGGGUCCG----CCCGGUGGaaACUACaG- -5'
29036 3' -58.8 NC_006146.1 + 110022 0.7 0.581958
Target:  5'- gGCCCCAGGCcGGUCugCaggGGcUGUCa -3'
miRNA:   3'- -UGGGGUCCGcCCGGugGaaaCU-ACAG- -5'
29036 3' -58.8 NC_006146.1 + 104932 0.75 0.333147
Target:  5'- cGCCCCAGGCcaucacGGUCACCUUuaUGA-GUCa -3'
miRNA:   3'- -UGGGGUCCGc-----CCGGUGGAA--ACUaCAG- -5'
29036 3' -58.8 NC_006146.1 + 104438 0.68 0.682371
Target:  5'- uGCCCCAcauGGUGGGggugaaauCCACCag-GAUGUUg -3'
miRNA:   3'- -UGGGGU---CCGCCC--------GGUGGaaaCUACAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.