miRNA display CGI


Results 1 - 20 of 59 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29036 3' -58.8 NC_006146.1 + 78908 0.74 0.348183
Target:  5'- aGCCCCAGGcCGGGCCcGCCagugUGAUuGUg -3'
miRNA:   3'- -UGGGGUCC-GCCCGG-UGGaa--ACUA-CAg -5'
29036 3' -58.8 NC_006146.1 + 78640 0.67 0.721855
Target:  5'- aGCCCCAGGcCGGGcCCGCCc-------- -3'
miRNA:   3'- -UGGGGUCC-GCCC-GGUGGaaacuacag -5'
29036 3' -58.8 NC_006146.1 + 78730 0.67 0.721855
Target:  5'- aGCCCCAGGcCGGGcCCGCCc-------- -3'
miRNA:   3'- -UGGGGUCC-GCCC-GGUGGaaacuacag -5'
29036 3' -58.8 NC_006146.1 + 160605 0.66 0.814116
Target:  5'- uGCCCCcgAGGUcGGCCGCCUggcAUGcCa -3'
miRNA:   3'- -UGGGG--UCCGcCCGGUGGAaacUACaG- -5'
29036 3' -58.8 NC_006146.1 + 10111 0.71 0.532607
Target:  5'- uCCCUgcuggAGGauuucaaGGGCUACCUggGAUGUCa -3'
miRNA:   3'- uGGGG-----UCCg------CCCGGUGGAaaCUACAG- -5'
29036 3' -58.8 NC_006146.1 + 60961 0.7 0.552195
Target:  5'- gGCCCgGGGgugggGGGUCACCUUggugGAUGUg -3'
miRNA:   3'- -UGGGgUCCg----CCCGGUGGAAa---CUACAg -5'
29036 3' -58.8 NC_006146.1 + 44265 0.7 0.591958
Target:  5'- uGCCCCu-GCGGGCC-CCgg-GGUGUg -3'
miRNA:   3'- -UGGGGucCGCCCGGuGGaaaCUACAg -5'
29036 3' -58.8 NC_006146.1 + 119132 0.69 0.652305
Target:  5'- gGCUCUGGGCagagaGGCCACCUUUuacgcGUGUCg -3'
miRNA:   3'- -UGGGGUCCGc----CCGGUGGAAAc----UACAG- -5'
29036 3' -58.8 NC_006146.1 + 104438 0.68 0.682371
Target:  5'- uGCCCCAcauGGUGGGggugaaauCCACCag-GAUGUUg -3'
miRNA:   3'- -UGGGGU---CCGCCC--------GGUGGaaaCUACAG- -5'
29036 3' -58.8 NC_006146.1 + 78610 0.67 0.721855
Target:  5'- aGCCCCAGGcCGGGcCCGCCc-------- -3'
miRNA:   3'- -UGGGGUCC-GCCC-GGUGGaaacuacag -5'
29036 3' -58.8 NC_006146.1 + 4327 0.68 0.692323
Target:  5'- gAUCCaGGGCGGGUCGCuCUUUGAg--- -3'
miRNA:   3'- -UGGGgUCCGCCCGGUG-GAAACUacag -5'
29036 3' -58.8 NC_006146.1 + 114169 0.68 0.662353
Target:  5'- gGCCCUGGGCagcaGGGUCACCa-UGAUG-Ca -3'
miRNA:   3'- -UGGGGUCCG----CCCGGUGGaaACUACaG- -5'
29036 3' -58.8 NC_006146.1 + 70691 0.74 0.363698
Target:  5'- -aCUCAGGCcacGGGCCGCC--UGGUGUCu -3'
miRNA:   3'- ugGGGUCCG---CCCGGUGGaaACUACAG- -5'
29036 3' -58.8 NC_006146.1 + 150782 0.68 0.702227
Target:  5'- gGCCCCcagcAGGUgccGGGCCACC----GUGUCc -3'
miRNA:   3'- -UGGGG----UCCG---CCCGGUGGaaacUACAG- -5'
29036 3' -58.8 NC_006146.1 + 78820 0.74 0.363698
Target:  5'- aGCCCCAGGcCGGGCCGCCc-------- -3'
miRNA:   3'- -UGGGGUCC-GCCCGGUGGaaacuacag -5'
29036 3' -58.8 NC_006146.1 + 52276 0.69 0.652305
Target:  5'- gGCCCCGGGCGcccCCACguaCUggagGAUGUCa -3'
miRNA:   3'- -UGGGGUCCGCcc-GGUG---GAaa--CUACAG- -5'
29036 3' -58.8 NC_006146.1 + 48642 0.68 0.712074
Target:  5'- gGCUCCGGGCGGGUgcccagCGCCUUcUGAa--- -3'
miRNA:   3'- -UGGGGUCCGCCCG------GUGGAA-ACUacag -5'
29036 3' -58.8 NC_006146.1 + 78700 0.67 0.721855
Target:  5'- aGCCCCAGGcCGGGcCCGCCc-------- -3'
miRNA:   3'- -UGGGGUCC-GCCC-GGUGGaaacuacag -5'
29036 3' -58.8 NC_006146.1 + 153199 0.71 0.493292
Target:  5'- cCCCCAGGCgcuuggccgccacGGGCCGCCcguaGAUGcCg -3'
miRNA:   3'- uGGGGUCCG-------------CCCGGUGGaaa-CUACaG- -5'
29036 3' -58.8 NC_006146.1 + 139161 0.7 0.581958
Target:  5'- cCCCCGGGgGGGC-GCCUgUGAggcggcuguuguUGUCa -3'
miRNA:   3'- uGGGGUCCgCCCGgUGGAaACU------------ACAG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.