Results 1 - 20 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29036 | 3' | -58.8 | NC_006146.1 | + | 78908 | 0.74 | 0.348183 |
Target: 5'- aGCCCCAGGcCGGGCCcGCCagugUGAUuGUg -3' miRNA: 3'- -UGGGGUCC-GCCCGG-UGGaa--ACUA-CAg -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 78640 | 0.67 | 0.721855 |
Target: 5'- aGCCCCAGGcCGGGcCCGCCc-------- -3' miRNA: 3'- -UGGGGUCC-GCCC-GGUGGaaacuacag -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 78730 | 0.67 | 0.721855 |
Target: 5'- aGCCCCAGGcCGGGcCCGCCc-------- -3' miRNA: 3'- -UGGGGUCC-GCCC-GGUGGaaacuacag -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 160605 | 0.66 | 0.814116 |
Target: 5'- uGCCCCcgAGGUcGGCCGCCUggcAUGcCa -3' miRNA: 3'- -UGGGG--UCCGcCCGGUGGAaacUACaG- -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 10111 | 0.71 | 0.532607 |
Target: 5'- uCCCUgcuggAGGauuucaaGGGCUACCUggGAUGUCa -3' miRNA: 3'- uGGGG-----UCCg------CCCGGUGGAaaCUACAG- -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 60961 | 0.7 | 0.552195 |
Target: 5'- gGCCCgGGGgugggGGGUCACCUUggugGAUGUg -3' miRNA: 3'- -UGGGgUCCg----CCCGGUGGAAa---CUACAg -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 44265 | 0.7 | 0.591958 |
Target: 5'- uGCCCCu-GCGGGCC-CCgg-GGUGUg -3' miRNA: 3'- -UGGGGucCGCCCGGuGGaaaCUACAg -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 119132 | 0.69 | 0.652305 |
Target: 5'- gGCUCUGGGCagagaGGCCACCUUUuacgcGUGUCg -3' miRNA: 3'- -UGGGGUCCGc----CCGGUGGAAAc----UACAG- -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 104438 | 0.68 | 0.682371 |
Target: 5'- uGCCCCAcauGGUGGGggugaaauCCACCag-GAUGUUg -3' miRNA: 3'- -UGGGGU---CCGCCC--------GGUGGaaaCUACAG- -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 78610 | 0.67 | 0.721855 |
Target: 5'- aGCCCCAGGcCGGGcCCGCCc-------- -3' miRNA: 3'- -UGGGGUCC-GCCC-GGUGGaaacuacag -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 4327 | 0.68 | 0.692323 |
Target: 5'- gAUCCaGGGCGGGUCGCuCUUUGAg--- -3' miRNA: 3'- -UGGGgUCCGCCCGGUG-GAAACUacag -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 114169 | 0.68 | 0.662353 |
Target: 5'- gGCCCUGGGCagcaGGGUCACCa-UGAUG-Ca -3' miRNA: 3'- -UGGGGUCCG----CCCGGUGGaaACUACaG- -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 70691 | 0.74 | 0.363698 |
Target: 5'- -aCUCAGGCcacGGGCCGCC--UGGUGUCu -3' miRNA: 3'- ugGGGUCCG---CCCGGUGGaaACUACAG- -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 150782 | 0.68 | 0.702227 |
Target: 5'- gGCCCCcagcAGGUgccGGGCCACC----GUGUCc -3' miRNA: 3'- -UGGGG----UCCG---CCCGGUGGaaacUACAG- -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 78820 | 0.74 | 0.363698 |
Target: 5'- aGCCCCAGGcCGGGCCGCCc-------- -3' miRNA: 3'- -UGGGGUCC-GCCCGGUGGaaacuacag -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 52276 | 0.69 | 0.652305 |
Target: 5'- gGCCCCGGGCGcccCCACguaCUggagGAUGUCa -3' miRNA: 3'- -UGGGGUCCGCcc-GGUG---GAaa--CUACAG- -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 48642 | 0.68 | 0.712074 |
Target: 5'- gGCUCCGGGCGGGUgcccagCGCCUUcUGAa--- -3' miRNA: 3'- -UGGGGUCCGCCCG------GUGGAA-ACUacag -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 78700 | 0.67 | 0.721855 |
Target: 5'- aGCCCCAGGcCGGGcCCGCCc-------- -3' miRNA: 3'- -UGGGGUCC-GCCC-GGUGGaaacuacag -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 153199 | 0.71 | 0.493292 |
Target: 5'- cCCCCAGGCgcuuggccgccacGGGCCGCCcguaGAUGcCg -3' miRNA: 3'- uGGGGUCCG-------------CCCGGUGGaaa-CUACaG- -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 139161 | 0.7 | 0.581958 |
Target: 5'- cCCCCGGGgGGGC-GCCUgUGAggcggcuguuguUGUCa -3' miRNA: 3'- uGGGGUCCgCCCGgUGGAaACU------------ACAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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