Results 21 - 40 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29036 | 3' | -58.8 | NC_006146.1 | + | 78461 | 1.09 | 0.001695 |
Target: 5'- gACCCCAGGCGGGCCACCUUUGAUGUCu -3' miRNA: 3'- -UGGGGUCCGCCCGGUGGAAACUACAG- -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 129848 | 0.67 | 0.769464 |
Target: 5'- cACCCCgAGGCccccaGGGCCGCCgcgGAc--- -3' miRNA: 3'- -UGGGG-UCCG-----CCCGGUGGaaaCUacag -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 15703 | 0.67 | 0.760144 |
Target: 5'- -gCCCAGGCcaGGCCACCUUaGAc--- -3' miRNA: 3'- ugGGGUCCGc-CCGGUGGAAaCUacag -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 78580 | 0.67 | 0.731561 |
Target: 5'- uGCCCCAGGcCGGGcCCGCCc-------- -3' miRNA: 3'- -UGGGGUCC-GCCC-GGUGGaaacuacag -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 160605 | 0.66 | 0.814116 |
Target: 5'- uGCCCCcgAGGUcGGCCGCCUggcAUGcCa -3' miRNA: 3'- -UGGGG--UCCGcCCGGUGGAaacUACaG- -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 51744 | 0.66 | 0.805473 |
Target: 5'- cGCCCCgAGGUGGGCUuCUUgugcgGGcUGUCc -3' miRNA: 3'- -UGGGG-UCCGCCCGGuGGAaa---CU-ACAG- -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 28014 | 0.67 | 0.760144 |
Target: 5'- -gCCCAGGCcaGGCCACCUUaGAc--- -3' miRNA: 3'- ugGGGUCCGc-CCGGUGGAAaCUacag -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 78878 | 0.67 | 0.721855 |
Target: 5'- aGCCCCAGGcCGGGcCCGCCc-------- -3' miRNA: 3'- -UGGGGUCC-GCCC-GGUGGaaacuacag -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 33864 | 0.66 | 0.805473 |
Target: 5'- aACCCCAGGCccccacccGGCCuCCUccccggGGUGUg -3' miRNA: 3'- -UGGGGUCCGc-------CCGGuGGAaa----CUACAg -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 78848 | 0.67 | 0.721855 |
Target: 5'- aGCCCCAGGcCGGGcCCGCCc-------- -3' miRNA: 3'- -UGGGGUCC-GCCC-GGUGGaaacuacag -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 114247 | 0.67 | 0.769464 |
Target: 5'- cACCUCAGGgaGGGCCAgCUcguagUGGUGcCc -3' miRNA: 3'- -UGGGGUCCg-CCCGGUgGAa----ACUACaG- -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 157488 | 0.66 | 0.78774 |
Target: 5'- --aCCGGGCGGGCCuugcagACCUggcUGAggcaGUCc -3' miRNA: 3'- uggGGUCCGCCCGG------UGGAa--ACUa---CAG- -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 21859 | 0.67 | 0.760144 |
Target: 5'- -gCCCAGGCcaGGCCACCUUaGAc--- -3' miRNA: 3'- ugGGGUCCGc-CCGGUGGAAaCUacag -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 18781 | 0.67 | 0.760144 |
Target: 5'- -gCCCAGGCcaGGCCACCUUaGAc--- -3' miRNA: 3'- ugGGGUCCGc-CCGGUGGAAaCUacag -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 12624 | 0.67 | 0.760144 |
Target: 5'- -gCCCAGGCcaGGCCACCUUaGAc--- -3' miRNA: 3'- ugGGGUCCGc-CCGGUGGAAaCUacag -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 57332 | 0.67 | 0.741184 |
Target: 5'- gGCUCUcuggGGGCgGGGCC-CCg--GGUGUCg -3' miRNA: 3'- -UGGGG----UCCG-CCCGGuGGaaaCUACAG- -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 10979 | 0.66 | 0.814116 |
Target: 5'- cACCUaaagCAGGCGGcGCUGCCggUGAcggggGUCu -3' miRNA: 3'- -UGGG----GUCCGCC-CGGUGGaaACUa----CAG- -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 57180 | 0.66 | 0.805473 |
Target: 5'- cACCCCA-GUGGGCCcCCU--GGUGg- -3' miRNA: 3'- -UGGGGUcCGCCCGGuGGAaaCUACag -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 78790 | 0.67 | 0.721855 |
Target: 5'- aGCCCCAGGcCGGGcCCGCCc-------- -3' miRNA: 3'- -UGGGGUCC-GCCC-GGUGGaaacuacag -5' |
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29036 | 3' | -58.8 | NC_006146.1 | + | 158059 | 0.73 | 0.412185 |
Target: 5'- cGCCCCAGGCGccuccucggguccGGCCGCCg--GAgggcucuaacccUGUCu -3' miRNA: 3'- -UGGGGUCCGC-------------CCGGUGGaaaCU------------ACAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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