miRNA display CGI


Results 1 - 20 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29036 5' -56.1 NC_006146.1 + 10672 0.66 0.918242
Target:  5'- gGGAGGCCCGG---GGCgaUACCCGcGGg -3'
miRNA:   3'- gUCUUCGGGCCuaaCCG--GUGGGUuCU- -5'
29036 5' -56.1 NC_006146.1 + 59758 0.66 0.915947
Target:  5'- aGGAGGCCagccgcccGGCCACCUggGGg -3'
miRNA:   3'- gUCUUCGGgccuaa--CCGGUGGGuuCU- -5'
29036 5' -56.1 NC_006146.1 + 3895 0.66 0.912434
Target:  5'- -cGAGGCCCaccGAcgaGGCC-CCCAAGGu -3'
miRNA:   3'- guCUUCGGGc--CUaa-CCGGuGGGUUCU- -5'
29036 5' -56.1 NC_006146.1 + 129113 0.66 0.912434
Target:  5'- gCAGAGGgCCUGaGAgcGGgCGCCCGGGc -3'
miRNA:   3'- -GUCUUC-GGGC-CUaaCCgGUGGGUUCu -5'
29036 5' -56.1 NC_006146.1 + 47589 0.66 0.912434
Target:  5'- gCAGAcGuCCCGGAUccacucggcGGCCGCCaGGGAu -3'
miRNA:   3'- -GUCUuC-GGGCCUAa--------CCGGUGGgUUCU- -5'
29036 5' -56.1 NC_006146.1 + 89689 0.66 0.912434
Target:  5'- aAGggGCCCGGGgaa-CgGCCUggGAu -3'
miRNA:   3'- gUCuuCGGGCCUaaccGgUGGGuuCU- -5'
29036 5' -56.1 NC_006146.1 + 128171 0.66 0.912434
Target:  5'- gCAGcaccGCCCGGAUccgcGGCUgccaGCCCGAGc -3'
miRNA:   3'- -GUCuu--CGGGCCUAa---CCGG----UGGGUUCu -5'
29036 5' -56.1 NC_006146.1 + 129049 0.66 0.906389
Target:  5'- -cGAGGcCCCGGuagccccUGGCCacgGCCCGGGu -3'
miRNA:   3'- guCUUC-GGGCCua-----ACCGG---UGGGUUCu -5'
29036 5' -56.1 NC_006146.1 + 146643 0.66 0.906389
Target:  5'- -cGAGGCCUGGGUccaUGGUCAgaaaacaacccuCCCGGGc -3'
miRNA:   3'- guCUUCGGGCCUA---ACCGGU------------GGGUUCu -5'
29036 5' -56.1 NC_006146.1 + 118489 0.66 0.906389
Target:  5'- gCAGAGGCCaCGGucuugacGGCC-CCCAc-- -3'
miRNA:   3'- -GUCUUCGG-GCCuaa----CCGGuGGGUucu -5'
29036 5' -56.1 NC_006146.1 + 82341 0.66 0.906389
Target:  5'- aAG-AGCCCGGGagucagGGCC-CCUAAGc -3'
miRNA:   3'- gUCuUCGGGCCUaa----CCGGuGGGUUCu -5'
29036 5' -56.1 NC_006146.1 + 53334 0.66 0.906389
Target:  5'- aGGAGGCCCGGc--GGCCGC--GGGGc -3'
miRNA:   3'- gUCUUCGGGCCuaaCCGGUGggUUCU- -5'
29036 5' -56.1 NC_006146.1 + 67593 0.66 0.906389
Target:  5'- gGGggGCCCGuGGcguUUGGCCuCCggugCGAGGa -3'
miRNA:   3'- gUCuuCGGGC-CU---AACCGGuGG----GUUCU- -5'
29036 5' -56.1 NC_006146.1 + 108472 0.66 0.90453
Target:  5'- ---uAGCCCGGA--GGCCgcuucagccagcccACCCGGGGu -3'
miRNA:   3'- gucuUCGGGCCUaaCCGG--------------UGGGUUCU- -5'
29036 5' -56.1 NC_006146.1 + 30126 0.66 0.900111
Target:  5'- aCAGAGcGCCCccaugcagggGGGUgggcaUGGCCACgcauCCGAGAg -3'
miRNA:   3'- -GUCUU-CGGG----------CCUA-----ACCGGUG----GGUUCU- -5'
29036 5' -56.1 NC_006146.1 + 43955 0.66 0.900111
Target:  5'- cCAGAcgcGCCCGGAgaGcGCCAUCCugccagcggGAGAg -3'
miRNA:   3'- -GUCUu--CGGGCCUaaC-CGGUGGG---------UUCU- -5'
29036 5' -56.1 NC_006146.1 + 43275 0.66 0.900111
Target:  5'- aAGAGGCagcgggCCGGcg-GuGCCGCCCAGGu -3'
miRNA:   3'- gUCUUCG------GGCCuaaC-CGGUGGGUUCu -5'
29036 5' -56.1 NC_006146.1 + 137707 0.66 0.900111
Target:  5'- cCAGGAGCacCCGGA--GGCCAggaCCGAGc -3'
miRNA:   3'- -GUCUUCG--GGCCUaaCCGGUg--GGUUCu -5'
29036 5' -56.1 NC_006146.1 + 33170 0.66 0.89947
Target:  5'- cCAGGAGCuccagaaCCGGGUaGGCCcgggcaccCCCGGGGg -3'
miRNA:   3'- -GUCUUCG-------GGCCUAaCCGGu-------GGGUUCU- -5'
29036 5' -56.1 NC_006146.1 + 94634 0.66 0.8936
Target:  5'- ---uGGgCCGGGUccaugaUGGCCGCCCuGGGg -3'
miRNA:   3'- gucuUCgGGCCUA------ACCGGUGGGuUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.