Results 1 - 20 of 169 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29036 | 5' | -56.1 | NC_006146.1 | + | 10672 | 0.66 | 0.918242 |
Target: 5'- gGGAGGCCCGG---GGCgaUACCCGcGGg -3' miRNA: 3'- gUCUUCGGGCCuaaCCG--GUGGGUuCU- -5' |
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29036 | 5' | -56.1 | NC_006146.1 | + | 47589 | 0.66 | 0.912434 |
Target: 5'- gCAGAcGuCCCGGAUccacucggcGGCCGCCaGGGAu -3' miRNA: 3'- -GUCUuC-GGGCCUAa--------CCGGUGGgUUCU- -5' |
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29036 | 5' | -56.1 | NC_006146.1 | + | 129113 | 0.66 | 0.912434 |
Target: 5'- gCAGAGGgCCUGaGAgcGGgCGCCCGGGc -3' miRNA: 3'- -GUCUUC-GGGC-CUaaCCgGUGGGUUCu -5' |
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29036 | 5' | -56.1 | NC_006146.1 | + | 89689 | 0.66 | 0.912434 |
Target: 5'- aAGggGCCCGGGgaa-CgGCCUggGAu -3' miRNA: 3'- gUCuuCGGGCCUaaccGgUGGGuuCU- -5' |
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29036 | 5' | -56.1 | NC_006146.1 | + | 94804 | 0.66 | 0.8936 |
Target: 5'- gUAGGccaGGCCCGGg--GGUUGCCCAccaGGAa -3' miRNA: 3'- -GUCU---UCGGGCCuaaCCGGUGGGU---UCU- -5' |
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29036 | 5' | -56.1 | NC_006146.1 | + | 43275 | 0.66 | 0.900111 |
Target: 5'- aAGAGGCagcgggCCGGcg-GuGCCGCCCAGGu -3' miRNA: 3'- gUCUUCG------GGCCuaaC-CGGUGGGUUCu -5' |
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29036 | 5' | -56.1 | NC_006146.1 | + | 108472 | 0.66 | 0.90453 |
Target: 5'- ---uAGCCCGGA--GGCCgcuucagccagcccACCCGGGGu -3' miRNA: 3'- gucuUCGGGCCUaaCCGG--------------UGGGUUCU- -5' |
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29036 | 5' | -56.1 | NC_006146.1 | + | 53334 | 0.66 | 0.906389 |
Target: 5'- aGGAGGCCCGGc--GGCCGC--GGGGc -3' miRNA: 3'- gUCUUCGGGCCuaaCCGGUGggUUCU- -5' |
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29036 | 5' | -56.1 | NC_006146.1 | + | 118489 | 0.66 | 0.906389 |
Target: 5'- gCAGAGGCCaCGGucuugacGGCC-CCCAc-- -3' miRNA: 3'- -GUCUUCGG-GCCuaa----CCGGuGGGUucu -5' |
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29036 | 5' | -56.1 | NC_006146.1 | + | 94634 | 0.66 | 0.8936 |
Target: 5'- ---uGGgCCGGGUccaugaUGGCCGCCCuGGGg -3' miRNA: 3'- gucuUCgGGCCUA------ACCGGUGGGuUCU- -5' |
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29036 | 5' | -56.1 | NC_006146.1 | + | 89372 | 0.66 | 0.892937 |
Target: 5'- -cGAGGCCCGaGGUcucguggUGGgCACCgAGGGg -3' miRNA: 3'- guCUUCGGGC-CUA-------ACCgGUGGgUUCU- -5' |
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29036 | 5' | -56.1 | NC_006146.1 | + | 33170 | 0.66 | 0.89947 |
Target: 5'- cCAGGAGCuccagaaCCGGGUaGGCCcgggcaccCCCGGGGg -3' miRNA: 3'- -GUCUUCG-------GGCCUAaCCGGu-------GGGUUCU- -5' |
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29036 | 5' | -56.1 | NC_006146.1 | + | 59758 | 0.66 | 0.915947 |
Target: 5'- aGGAGGCCagccgcccGGCCACCUggGGg -3' miRNA: 3'- gUCUUCGGgccuaa--CCGGUGGGuuCU- -5' |
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29036 | 5' | -56.1 | NC_006146.1 | + | 128171 | 0.66 | 0.912434 |
Target: 5'- gCAGcaccGCCCGGAUccgcGGCUgccaGCCCGAGc -3' miRNA: 3'- -GUCuu--CGGGCCUAa---CCGG----UGGGUUCu -5' |
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29036 | 5' | -56.1 | NC_006146.1 | + | 129049 | 0.66 | 0.906389 |
Target: 5'- -cGAGGcCCCGGuagccccUGGCCacgGCCCGGGu -3' miRNA: 3'- guCUUC-GGGCCua-----ACCGG---UGGGUUCu -5' |
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29036 | 5' | -56.1 | NC_006146.1 | + | 67593 | 0.66 | 0.906389 |
Target: 5'- gGGggGCCCGuGGcguUUGGCCuCCggugCGAGGa -3' miRNA: 3'- gUCuuCGGGC-CU---AACCGGuGG----GUUCU- -5' |
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29036 | 5' | -56.1 | NC_006146.1 | + | 82341 | 0.66 | 0.906389 |
Target: 5'- aAG-AGCCCGGGagucagGGCC-CCUAAGc -3' miRNA: 3'- gUCuUCGGGCCUaa----CCGGuGGGUUCu -5' |
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29036 | 5' | -56.1 | NC_006146.1 | + | 137707 | 0.66 | 0.900111 |
Target: 5'- cCAGGAGCacCCGGA--GGCCAggaCCGAGc -3' miRNA: 3'- -GUCUUCG--GGCCUaaCCGGUg--GGUUCu -5' |
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29036 | 5' | -56.1 | NC_006146.1 | + | 43955 | 0.66 | 0.900111 |
Target: 5'- cCAGAcgcGCCCGGAgaGcGCCAUCCugccagcggGAGAg -3' miRNA: 3'- -GUCUu--CGGGCCUaaC-CGGUGGG---------UUCU- -5' |
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29036 | 5' | -56.1 | NC_006146.1 | + | 30126 | 0.66 | 0.900111 |
Target: 5'- aCAGAGcGCCCccaugcagggGGGUgggcaUGGCCACgcauCCGAGAg -3' miRNA: 3'- -GUCUU-CGGG----------CCUA-----ACCGGUG----GGUUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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