Results 21 - 40 of 169 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29036 | 5' | -56.1 | NC_006146.1 | + | 59758 | 0.66 | 0.915947 |
Target: 5'- aGGAGGCCagccgcccGGCCACCUggGGg -3' miRNA: 3'- gUCUUCGGgccuaa--CCGGUGGGuuCU- -5' |
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29036 | 5' | -56.1 | NC_006146.1 | + | 10672 | 0.66 | 0.918242 |
Target: 5'- gGGAGGCCCGG---GGCgaUACCCGcGGg -3' miRNA: 3'- gUCUUCGGGCCuaaCCG--GUGGGUuCU- -5' |
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29036 | 5' | -56.1 | NC_006146.1 | + | 148377 | 0.67 | 0.886862 |
Target: 5'- aGGAcGCCUGGA--GGCgGaCCCGAGGg -3' miRNA: 3'- gUCUuCGGGCCUaaCCGgU-GGGUUCU- -5' |
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29036 | 5' | -56.1 | NC_006146.1 | + | 169273 | 0.67 | 0.857709 |
Target: 5'- -cGggGCCUGGcgggGGCCAgcgcgggguCCCGGGGc -3' miRNA: 3'- guCuuCGGGCCuaa-CCGGU---------GGGUUCU- -5' |
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29036 | 5' | -56.1 | NC_006146.1 | + | 170204 | 0.67 | 0.857709 |
Target: 5'- -cGggGCCUGGcgggGGCCAgcgcgggguCCCGGGGc -3' miRNA: 3'- guCuuCGGGCCuaa-CCGGU---------GGGUUCU- -5' |
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29036 | 5' | -56.1 | NC_006146.1 | + | 122747 | 0.67 | 0.856937 |
Target: 5'- uGGAGGCCCcuacgagGGGUacgagcgggggcUGGCCGaacUCCAAGAg -3' miRNA: 3'- gUCUUCGGG-------CCUA------------ACCGGU---GGGUUCU- -5' |
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29036 | 5' | -56.1 | NC_006146.1 | + | 289 | 0.67 | 0.860777 |
Target: 5'- gGGAAGaCCCGGGggcgGGCCcggcgcgcucgccacGCCCAGc- -3' miRNA: 3'- gUCUUC-GGGCCUaa--CCGG---------------UGGGUUcu -5' |
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29036 | 5' | -56.1 | NC_006146.1 | + | 13933 | 0.67 | 0.865317 |
Target: 5'- gCGGGugGGCCCGGg--GGa-GCCCAGGAc -3' miRNA: 3'- -GUCU--UCGGGCCuaaCCggUGGGUUCU- -5' |
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29036 | 5' | -56.1 | NC_006146.1 | + | 89117 | 0.67 | 0.865317 |
Target: 5'- -uGGAGCCCGGugggauugguAUUGuGCCucccggaaGCCCGGGGg -3' miRNA: 3'- guCUUCGGGCC----------UAAC-CGG--------UGGGUUCU- -5' |
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29036 | 5' | -56.1 | NC_006146.1 | + | 154336 | 0.67 | 0.889584 |
Target: 5'- -uGAAGCCCuGGAgaggggugaggacuuUggccucuggGGCCACCCGGGc -3' miRNA: 3'- guCUUCGGG-CCU---------------Aa--------CCGGUGGGUUCu -5' |
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29036 | 5' | -56.1 | NC_006146.1 | + | 151258 | 0.67 | 0.889584 |
Target: 5'- -uGAAGCCCuGGAgaggggugaggacuuUggccucuggGGCCACCCGGGc -3' miRNA: 3'- guCUUCGGG-CCU---------------Aa--------CCGGUGGGUUCu -5' |
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29036 | 5' | -56.1 | NC_006146.1 | + | 148180 | 0.67 | 0.889584 |
Target: 5'- -uGAAGCCCuGGAgaggggugaggacuuUggccucuggGGCCACCCGGGc -3' miRNA: 3'- guCUUCGGG-CCU---------------Aa--------CCGGUGGGUUCu -5' |
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29036 | 5' | -56.1 | NC_006146.1 | + | 145102 | 0.67 | 0.889584 |
Target: 5'- -uGAAGCCCuGGAgaggggugaggacuuUggccucuggGGCCACCCGGGc -3' miRNA: 3'- guCUUCGGG-CCU---------------Aa--------CCGGUGGGUUCu -5' |
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29036 | 5' | -56.1 | NC_006146.1 | + | 154533 | 0.67 | 0.886862 |
Target: 5'- aGGAcGCCUGGA--GGCgGaCCCGAGGg -3' miRNA: 3'- gUCUuCGGGCCUaaCCGgU-GGGUUCU- -5' |
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29036 | 5' | -56.1 | NC_006146.1 | + | 151455 | 0.67 | 0.886862 |
Target: 5'- aGGAcGCCUGGA--GGCgGaCCCGAGGg -3' miRNA: 3'- gUCUuCGGGCCUaaCCGgU-GGGUUCU- -5' |
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29036 | 5' | -56.1 | NC_006146.1 | + | 145299 | 0.67 | 0.886862 |
Target: 5'- aGGAcGCCUGGA--GGCgGaCCCGAGGg -3' miRNA: 3'- gUCUuCGGGCCUaaCCGgU-GGGUUCU- -5' |
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29036 | 5' | -56.1 | NC_006146.1 | + | 142221 | 0.67 | 0.886862 |
Target: 5'- aGGAcGCCUGGA--GGCgGaCCCGAGGg -3' miRNA: 3'- gUCUuCGGGCCUaaCCGgU-GGGUUCU- -5' |
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29036 | 5' | -56.1 | NC_006146.1 | + | 137396 | 0.67 | 0.886862 |
Target: 5'- gGGAGGCCgGGAggGuGCUgggguCCCGGGGa -3' miRNA: 3'- gUCUUCGGgCCUaaC-CGGu----GGGUUCU- -5' |
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29036 | 5' | -56.1 | NC_006146.1 | + | 105692 | 0.67 | 0.879899 |
Target: 5'- uGGAcGCCCGGGcucccagGGCC-CCCA-GAg -3' miRNA: 3'- gUCUuCGGGCCUaa-----CCGGuGGGUuCU- -5' |
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29036 | 5' | -56.1 | NC_006146.1 | + | 122525 | 0.67 | 0.872715 |
Target: 5'- -cGGAGCCCGGGU-GGUUcgcggaACUCGAGGc -3' miRNA: 3'- guCUUCGGGCCUAaCCGG------UGGGUUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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