Results 1 - 20 of 169 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29036 | 5' | -56.1 | NC_006146.1 | + | 78495 | 1.08 | 0.003172 |
Target: 5'- uCAGAAGCCCGGAUUGGCCACCCAAGAa -3' miRNA: 3'- -GUCUUCGGGCCUAACCGGUGGGUUCU- -5' |
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29036 | 5' | -56.1 | NC_006146.1 | + | 51845 | 0.77 | 0.337192 |
Target: 5'- gGGggGCUCGGGgccUGGCCcgaGCCCGGGGa -3' miRNA: 3'- gUCuuCGGGCCUa--ACCGG---UGGGUUCU- -5' |
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29036 | 5' | -56.1 | NC_006146.1 | + | 45529 | 0.75 | 0.427835 |
Target: 5'- uGGggGCCUGGGccuccuugggcUUGGCCGCCCuGGc -3' miRNA: 3'- gUCuuCGGGCCU-----------AACCGGUGGGuUCu -5' |
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29036 | 5' | -56.1 | NC_006146.1 | + | 167658 | 0.75 | 0.436767 |
Target: 5'- cCGGggGCCCGGGggcgUGucccGCgACCCGAGGg -3' miRNA: 3'- -GUCuuCGGGCCUa---AC----CGgUGGGUUCU- -5' |
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29036 | 5' | -56.1 | NC_006146.1 | + | 143266 | 0.75 | 0.436767 |
Target: 5'- cCGGugacgcuGGCCCGGAacuucccUGGCCACCCAguGGAc -3' miRNA: 3'- -GUCu------UCGGGCCUa------ACCGGUGGGU--UCU- -5' |
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29036 | 5' | -56.1 | NC_006146.1 | + | 89423 | 0.74 | 0.482961 |
Target: 5'- -uGAGGCCUGG-UUGGagGCCCAAGAg -3' miRNA: 3'- guCUUCGGGCCuAACCggUGGGUUCU- -5' |
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29036 | 5' | -56.1 | NC_006146.1 | + | 158724 | 0.74 | 0.492484 |
Target: 5'- gUAGGAGCCCGa---GGCC-CCCGAGAu -3' miRNA: 3'- -GUCUUCGGGCcuaaCCGGuGGGUUCU- -5' |
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29036 | 5' | -56.1 | NC_006146.1 | + | 131943 | 0.74 | 0.511781 |
Target: 5'- uGGggGCCCacccGGAUgccaaGGCCACCCucGAc -3' miRNA: 3'- gUCuuCGGG----CCUAa----CCGGUGGGuuCU- -5' |
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29036 | 5' | -56.1 | NC_006146.1 | + | 83655 | 0.73 | 0.520566 |
Target: 5'- --cGGGCCagaccuccaccuuUGGGUUGGCCACCCAGGu -3' miRNA: 3'- gucUUCGG-------------GCCUAACCGGUGGGUUCu -5' |
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29036 | 5' | -56.1 | NC_006146.1 | + | 77307 | 0.73 | 0.531383 |
Target: 5'- cCAGGAGCCCGGcg-GGUCgcgcauGCCCAGGc -3' miRNA: 3'- -GUCUUCGGGCCuaaCCGG------UGGGUUCu -5' |
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29036 | 5' | -56.1 | NC_006146.1 | + | 41602 | 0.73 | 0.561271 |
Target: 5'- gAGAGGCCCGGGgggcUGGUCcgcuggGCCCGGGc -3' miRNA: 3'- gUCUUCGGGCCUa---ACCGG------UGGGUUCu -5' |
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29036 | 5' | -56.1 | NC_006146.1 | + | 86518 | 0.73 | 0.561271 |
Target: 5'- cCGGAGGCCauGA-UGGCCGCCCGGu- -3' miRNA: 3'- -GUCUUCGGgcCUaACCGGUGGGUUcu -5' |
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29036 | 5' | -56.1 | NC_006146.1 | + | 131573 | 0.72 | 0.601776 |
Target: 5'- gCAGGAGauuCCCGGGgaGGCCAgCCGAGc -3' miRNA: 3'- -GUCUUC---GGGCCUaaCCGGUgGGUUCu -5' |
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29036 | 5' | -56.1 | NC_006146.1 | + | 125356 | 0.72 | 0.62219 |
Target: 5'- gCGGAGGCCaGGGc-GGCCaaGCCCAAGGa -3' miRNA: 3'- -GUCUUCGGgCCUaaCCGG--UGGGUUCU- -5' |
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29036 | 5' | -56.1 | NC_006146.1 | + | 60958 | 0.72 | 0.62219 |
Target: 5'- -uGAGGCCCGGGgguggggGGUCACCUugguGGAu -3' miRNA: 3'- guCUUCGGGCCUaa-----CCGGUGGGu---UCU- -5' |
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29036 | 5' | -56.1 | NC_006146.1 | + | 54714 | 0.72 | 0.62219 |
Target: 5'- aCGGcGGGCCCGGGUcagGGCgGCCgAGGGg -3' miRNA: 3'- -GUC-UUCGGGCCUAa--CCGgUGGgUUCU- -5' |
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29036 | 5' | -56.1 | NC_006146.1 | + | 157763 | 0.72 | 0.632413 |
Target: 5'- gGGAGGUCCGGGgugUUGaGCCugcugcCCCAGGAg -3' miRNA: 3'- gUCUUCGGGCCU---AAC-CGGu-----GGGUUCU- -5' |
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29036 | 5' | -56.1 | NC_006146.1 | + | 141305 | 0.72 | 0.632413 |
Target: 5'- -uGggGgUCGGGcUGGCCugCCAGGGg -3' miRNA: 3'- guCuuCgGGCCUaACCGGugGGUUCU- -5' |
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29036 | 5' | -56.1 | NC_006146.1 | + | 145452 | 0.72 | 0.632413 |
Target: 5'- gGGAGGUCCGGGgugUUGaGCCugcugcCCCAGGAg -3' miRNA: 3'- gUCUUCGGGCCU---AAC-CGGu-----GGGUUCU- -5' |
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29036 | 5' | -56.1 | NC_006146.1 | + | 148530 | 0.72 | 0.632413 |
Target: 5'- gGGAGGUCCGGGgugUUGaGCCugcugcCCCAGGAg -3' miRNA: 3'- gUCUUCGGGCCU---AAC-CGGu-----GGGUUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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