miRNA display CGI


Results 21 - 40 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29036 5' -56.1 NC_006146.1 + 147461 0.72 0.632413
Target:  5'- -uGggGgUCGGGcUGGCCugCCAGGGg -3'
miRNA:   3'- guCuuCgGGCCUaACCGGugGGUUCU- -5'
29036 5' -56.1 NC_006146.1 + 145452 0.72 0.632413
Target:  5'- gGGAGGUCCGGGgugUUGaGCCugcugcCCCAGGAg -3'
miRNA:   3'- gUCUUCGGGCCU---AAC-CGGu-----GGGUUCU- -5'
29036 5' -56.1 NC_006146.1 + 144383 0.72 0.632413
Target:  5'- -uGggGgUCGGGcUGGCCugCCAGGGg -3'
miRNA:   3'- guCuuCgGGCCUaACCGGugGGUUCU- -5'
29036 5' -56.1 NC_006146.1 + 142374 0.72 0.632413
Target:  5'- gGGAGGUCCGGGgugUUGaGCCugcugcCCCAGGAg -3'
miRNA:   3'- gUCUUCGGGCCU---AAC-CGGu-----GGGUUCU- -5'
29036 5' -56.1 NC_006146.1 + 141305 0.72 0.632413
Target:  5'- -uGggGgUCGGGcUGGCCugCCAGGGg -3'
miRNA:   3'- guCuuCgGGCCUaACCGGugGGUUCU- -5'
29036 5' -56.1 NC_006146.1 + 156694 0.72 0.632413
Target:  5'- -uGggGgUCGGGcUGGCCugCCAGGGg -3'
miRNA:   3'- guCuuCgGGCCUaACCGGugGGUUCU- -5'
29036 5' -56.1 NC_006146.1 + 157763 0.72 0.632413
Target:  5'- gGGAGGUCCGGGgugUUGaGCCugcugcCCCAGGAg -3'
miRNA:   3'- gUCUUCGGGCCU---AAC-CGGu-----GGGUUCU- -5'
29036 5' -56.1 NC_006146.1 + 58005 0.72 0.632413
Target:  5'- uGGAGGCCCGGGUcucGGCCuucgcgcagaGCCCGGc- -3'
miRNA:   3'- gUCUUCGGGCCUAa--CCGG----------UGGGUUcu -5'
29036 5' -56.1 NC_006146.1 + 102903 0.71 0.642635
Target:  5'- cCAGggGCCgugUGGcgUGGCUgcgcCCCAAGAu -3'
miRNA:   3'- -GUCuuCGG---GCCuaACCGGu---GGGUUCU- -5'
29036 5' -56.1 NC_006146.1 + 97368 0.71 0.642635
Target:  5'- gGGGAGCuCCGGAgccUGGCCAUgCAAa- -3'
miRNA:   3'- gUCUUCG-GGCCUa--ACCGGUGgGUUcu -5'
29036 5' -56.1 NC_006146.1 + 137225 0.71 0.663046
Target:  5'- aGGAAGCCgGGugggGGCCugggguCCCGGGGa -3'
miRNA:   3'- gUCUUCGGgCCuaa-CCGGu-----GGGUUCU- -5'
29036 5' -56.1 NC_006146.1 + 130293 0.71 0.671187
Target:  5'- gAGAAGCagcggcggcaugCGGAgguucGGCCGCCCAGGGc -3'
miRNA:   3'- gUCUUCGg-----------GCCUaa---CCGGUGGGUUCU- -5'
29036 5' -56.1 NC_006146.1 + 154685 0.71 0.673219
Target:  5'- uGGGAGUCCGGGgugUUGaGCCugcugcCCCAGGAg -3'
miRNA:   3'- gUCUUCGGGCCU---AAC-CGGu-----GGGUUCU- -5'
29036 5' -56.1 NC_006146.1 + 167880 0.71 0.683358
Target:  5'- gGGGAGcCCCGG---GGCgGCCCGGGGa -3'
miRNA:   3'- gUCUUC-GGGCCuaaCCGgUGGGUUCU- -5'
29036 5' -56.1 NC_006146.1 + 169744 0.71 0.683358
Target:  5'- gGGGAGcCCCGG---GGCgGCCCGGGGa -3'
miRNA:   3'- gUCUUC-GGGCCuaaCCGgUGGGUUCU- -5'
29036 5' -56.1 NC_006146.1 + 168812 0.71 0.683358
Target:  5'- gGGGAGcCCCGG---GGCgGCCCGGGGa -3'
miRNA:   3'- gUCUUC-GGGCCuaaCCGgUGGGUUCU- -5'
29036 5' -56.1 NC_006146.1 + 111705 0.71 0.683358
Target:  5'- gGGGAGCCCugcaGGAUggagcaGGCCACCacaAAGGu -3'
miRNA:   3'- gUCUUCGGG----CCUAa-----CCGGUGGg--UUCU- -5'
29036 5' -56.1 NC_006146.1 + 92086 0.7 0.693455
Target:  5'- aCGGcuGCCUGGAcgcgugGGCCuCCCAGGGa -3'
miRNA:   3'- -GUCuuCGGGCCUaa----CCGGuGGGUUCU- -5'
29036 5' -56.1 NC_006146.1 + 147768 0.7 0.713487
Target:  5'- -cGAAGCCCaGGcucccGGCCucuCCCAGGAa -3'
miRNA:   3'- guCUUCGGG-CCuaa--CCGGu--GGGUUCU- -5'
29036 5' -56.1 NC_006146.1 + 153304 0.7 0.713487
Target:  5'- cCAGGcaccaGGCCCGGGccaGGUCGCCCAGc- -3'
miRNA:   3'- -GUCU-----UCGGGCCUaa-CCGGUGGGUUcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.