miRNA display CGI


Results 21 - 40 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29036 5' -56.1 NC_006146.1 + 94634 0.66 0.8936
Target:  5'- ---uGGgCCGGGUccaugaUGGCCGCCCuGGGg -3'
miRNA:   3'- gucuUCgGGCCUA------ACCGGUGGGuUCU- -5'
29036 5' -56.1 NC_006146.1 + 89372 0.66 0.892937
Target:  5'- -cGAGGCCCGaGGUcucguggUGGgCACCgAGGGg -3'
miRNA:   3'- guCUUCGGGC-CUA-------ACCgGUGGgUUCU- -5'
29036 5' -56.1 NC_006146.1 + 151258 0.67 0.889584
Target:  5'- -uGAAGCCCuGGAgaggggugaggacuuUggccucuggGGCCACCCGGGc -3'
miRNA:   3'- guCUUCGGG-CCU---------------Aa--------CCGGUGGGUUCu -5'
29036 5' -56.1 NC_006146.1 + 157414 0.67 0.889584
Target:  5'- -uGAAGCCCuGGAgaggggugaggacuuUggccucuggGGCCACCCGGGc -3'
miRNA:   3'- guCUUCGGG-CCU---------------Aa--------CCGGUGGGUUCu -5'
29036 5' -56.1 NC_006146.1 + 148180 0.67 0.889584
Target:  5'- -uGAAGCCCuGGAgaggggugaggacuuUggccucuggGGCCACCCGGGc -3'
miRNA:   3'- guCUUCGGG-CCU---------------Aa--------CCGGUGGGUUCu -5'
29036 5' -56.1 NC_006146.1 + 145102 0.67 0.889584
Target:  5'- -uGAAGCCCuGGAgaggggugaggacuuUggccucuggGGCCACCCGGGc -3'
miRNA:   3'- guCUUCGGG-CCU---------------Aa--------CCGGUGGGUUCu -5'
29036 5' -56.1 NC_006146.1 + 142024 0.67 0.889584
Target:  5'- -uGAAGCCCuGGAgaggggugaggacuuUggccucuggGGCCACCCGGGc -3'
miRNA:   3'- guCUUCGGG-CCU---------------Aa--------CCGGUGGGUUCu -5'
29036 5' -56.1 NC_006146.1 + 154336 0.67 0.889584
Target:  5'- -uGAAGCCCuGGAgaggggugaggacuuUggccucuggGGCCACCCGGGc -3'
miRNA:   3'- guCUUCGGG-CCU---------------Aa--------CCGGUGGGUUCu -5'
29036 5' -56.1 NC_006146.1 + 127053 0.67 0.886862
Target:  5'- cCAGAGGCCCucGAgcUGGCgGCgCGGGAa -3'
miRNA:   3'- -GUCUUCGGGc-CUa-ACCGgUGgGUUCU- -5'
29036 5' -56.1 NC_006146.1 + 30236 0.67 0.886862
Target:  5'- cCGGAuacCCCGGAaaUUGGCCGCaaaAAGGg -3'
miRNA:   3'- -GUCUuc-GGGCCU--AACCGGUGgg-UUCU- -5'
29036 5' -56.1 NC_006146.1 + 157611 0.67 0.886862
Target:  5'- aGGAcGCCUGGA--GGCgGaCCCGAGGg -3'
miRNA:   3'- gUCUuCGGGCCUaaCCGgU-GGGUUCU- -5'
29036 5' -56.1 NC_006146.1 + 154533 0.67 0.886862
Target:  5'- aGGAcGCCUGGA--GGCgGaCCCGAGGg -3'
miRNA:   3'- gUCUuCGGGCCUaaCCGgU-GGGUUCU- -5'
29036 5' -56.1 NC_006146.1 + 151455 0.67 0.886862
Target:  5'- aGGAcGCCUGGA--GGCgGaCCCGAGGg -3'
miRNA:   3'- gUCUuCGGGCCUaaCCGgU-GGGUUCU- -5'
29036 5' -56.1 NC_006146.1 + 145299 0.67 0.886862
Target:  5'- aGGAcGCCUGGA--GGCgGaCCCGAGGg -3'
miRNA:   3'- gUCUuCGGGCCUaaCCGgU-GGGUUCU- -5'
29036 5' -56.1 NC_006146.1 + 148377 0.67 0.886862
Target:  5'- aGGAcGCCUGGA--GGCgGaCCCGAGGg -3'
miRNA:   3'- gUCUuCGGGCCUaaCCGgU-GGGUUCU- -5'
29036 5' -56.1 NC_006146.1 + 137396 0.67 0.886862
Target:  5'- gGGAGGCCgGGAggGuGCUgggguCCCGGGGa -3'
miRNA:   3'- gUCUUCGGgCCUaaC-CGGu----GGGUUCU- -5'
29036 5' -56.1 NC_006146.1 + 142221 0.67 0.886862
Target:  5'- aGGAcGCCUGGA--GGCgGaCCCGAGGg -3'
miRNA:   3'- gUCUuCGGGCCUaaCCGgU-GGGUUCU- -5'
29036 5' -56.1 NC_006146.1 + 159982 0.67 0.886176
Target:  5'- gCAGGAGCCCgcaguugGGGUcUGGCCuCCUgugGAGGg -3'
miRNA:   3'- -GUCUUCGGG-------CCUA-ACCGGuGGG---UUCU- -5'
29036 5' -56.1 NC_006146.1 + 149198 0.67 0.879899
Target:  5'- aAGAGGCacugcaGGAUguUGGCCGCCCc--- -3'
miRNA:   3'- gUCUUCGgg----CCUA--ACCGGUGGGuucu -5'
29036 5' -56.1 NC_006146.1 + 105692 0.67 0.879899
Target:  5'- uGGAcGCCCGGGcucccagGGCC-CCCA-GAg -3'
miRNA:   3'- gUCUuCGGGCCUaa-----CCGGuGGGUuCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.