miRNA display CGI


Results 41 - 60 of 169 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29036 5' -56.1 NC_006146.1 + 105692 0.67 0.879899
Target:  5'- uGGAcGCCCGGGcucccagGGCC-CCCA-GAg -3'
miRNA:   3'- gUCUuCGGGCCUaa-----CCGGuGGGUuCU- -5'
29036 5' -56.1 NC_006146.1 + 51179 0.67 0.872715
Target:  5'- -uGGAGCCgGGGa-GGCUGCUCGAGGa -3'
miRNA:   3'- guCUUCGGgCCUaaCCGGUGGGUUCU- -5'
29036 5' -56.1 NC_006146.1 + 114202 0.67 0.872715
Target:  5'- gUAGAGGCUCaGGUUguccagcagGGCCAgcCCCAGGGg -3'
miRNA:   3'- -GUCUUCGGGcCUAA---------CCGGU--GGGUUCU- -5'
29036 5' -56.1 NC_006146.1 + 122525 0.67 0.872715
Target:  5'- -cGGAGCCCGGGU-GGUUcgcggaACUCGAGGc -3'
miRNA:   3'- guCUUCGGGCCUAaCCGG------UGGGUUCU- -5'
29036 5' -56.1 NC_006146.1 + 13933 0.67 0.865317
Target:  5'- gCGGGugGGCCCGGg--GGa-GCCCAGGAc -3'
miRNA:   3'- -GUCU--UCGGGCCuaaCCggUGGGUUCU- -5'
29036 5' -56.1 NC_006146.1 + 89117 0.67 0.865317
Target:  5'- -uGGAGCCCGGugggauugguAUUGuGCCucccggaaGCCCGGGGg -3'
miRNA:   3'- guCUUCGGGCC----------UAAC-CGG--------UGGGUUCU- -5'
29036 5' -56.1 NC_006146.1 + 67139 0.67 0.865317
Target:  5'- aGGAAGaCCgGGAgccgcUGGCCGCUCcuGAg -3'
miRNA:   3'- gUCUUC-GGgCCUa----ACCGGUGGGuuCU- -5'
29036 5' -56.1 NC_006146.1 + 289 0.67 0.860777
Target:  5'- gGGAAGaCCCGGGggcgGGCCcggcgcgcucgccacGCCCAGc- -3'
miRNA:   3'- gUCUUC-GGGCCUaa--CCGG---------------UGGGUUcu -5'
29036 5' -56.1 NC_006146.1 + 170204 0.67 0.857709
Target:  5'- -cGggGCCUGGcgggGGCCAgcgcgggguCCCGGGGc -3'
miRNA:   3'- guCuuCGGGCCuaa-CCGGU---------GGGUUCU- -5'
29036 5' -56.1 NC_006146.1 + 168341 0.67 0.857709
Target:  5'- -cGggGCCUGGcgggGGCCAgcgcgggguCCCGGGGc -3'
miRNA:   3'- guCuuCGGGCCuaa-CCGGU---------GGGUUCU- -5'
29036 5' -56.1 NC_006146.1 + 167409 0.67 0.857709
Target:  5'- -cGggGCCUGGcgggGGCCAgcgcgggguCCCGGGGc -3'
miRNA:   3'- guCuuCGGGCCuaa-CCGGU---------GGGUUCU- -5'
29036 5' -56.1 NC_006146.1 + 128180 0.67 0.857709
Target:  5'- -cGAcGCCgGGA--GGCgGCCCAGGGg -3'
miRNA:   3'- guCUuCGGgCCUaaCCGgUGGGUUCU- -5'
29036 5' -56.1 NC_006146.1 + 49713 0.67 0.857709
Target:  5'- cCAGggGCCaCGGAaUGccggucauGUCGCCUAGGGc -3'
miRNA:   3'- -GUCuuCGG-GCCUaAC--------CGGUGGGUUCU- -5'
29036 5' -56.1 NC_006146.1 + 169273 0.67 0.857709
Target:  5'- -cGggGCCUGGcgggGGCCAgcgcgggguCCCGGGGc -3'
miRNA:   3'- guCuuCGGGCCuaa-CCGGU---------GGGUUCU- -5'
29036 5' -56.1 NC_006146.1 + 122747 0.67 0.856937
Target:  5'- uGGAGGCCCcuacgagGGGUacgagcgggggcUGGCCGaacUCCAAGAg -3'
miRNA:   3'- gUCUUCGGG-------CCUA------------ACCGGU---GGGUUCU- -5'
29036 5' -56.1 NC_006146.1 + 13975 0.67 0.856163
Target:  5'- -cGGAGCCCGucagcgccGCCACCCAGGc -3'
miRNA:   3'- guCUUCGGGCcuaac---CGGUGGGUUCu -5'
29036 5' -56.1 NC_006146.1 + 123558 0.67 0.853047
Target:  5'- gCAGAcuggaaacggcgccuGGCCCGGcuggaGGCCAucaUCCAGGAg -3'
miRNA:   3'- -GUCU---------------UCGGGCCuaa--CCGGU---GGGUUCU- -5'
29036 5' -56.1 NC_006146.1 + 33222 0.67 0.849898
Target:  5'- gGGGAGCCgGGAUggGGCUGggguUCCGGGGg -3'
miRNA:   3'- gUCUUCGGgCCUAa-CCGGU----GGGUUCU- -5'
29036 5' -56.1 NC_006146.1 + 43628 0.67 0.849898
Target:  5'- aGGGAGUgggcggCGGGgcgUGGCCGCCUggGGa -3'
miRNA:   3'- gUCUUCGg-----GCCUa--ACCGGUGGGuuCU- -5'
29036 5' -56.1 NC_006146.1 + 71668 0.67 0.849898
Target:  5'- aAGAAGCCCGaGAcggUGGUCgggcGCgCCGAGGc -3'
miRNA:   3'- gUCUUCGGGC-CUa--ACCGG----UG-GGUUCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.