miRNA display CGI


Results 1 - 20 of 169 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29036 5' -56.1 NC_006146.1 + 133 0.68 0.841078
Target:  5'- aCAGGAcuauggcGCCUGGA-UGGCUGCCCGuGGu -3'
miRNA:   3'- -GUCUU-------CGGGCCUaACCGGUGGGUuCU- -5'
29036 5' -56.1 NC_006146.1 + 289 0.67 0.860777
Target:  5'- gGGAAGaCCCGGGggcgGGCCcggcgcgcucgccacGCCCAGc- -3'
miRNA:   3'- gUCUUC-GGGCCUaa--CCGG---------------UGGGUUcu -5'
29036 5' -56.1 NC_006146.1 + 1220 0.68 0.799146
Target:  5'- gGGAAGaCCCGGGggcgGGCCACgCGc-- -3'
miRNA:   3'- gUCUUC-GGGCCUaa--CCGGUGgGUucu -5'
29036 5' -56.1 NC_006146.1 + 2152 0.68 0.799146
Target:  5'- gGGAAGaCCCGGGggcgGGCCACgCGc-- -3'
miRNA:   3'- gUCUUC-GGGCCUaa--CCGGUGgGUucu -5'
29036 5' -56.1 NC_006146.1 + 3084 0.68 0.799146
Target:  5'- gGGAAGaCCCGGGggcgGGCCACgCGc-- -3'
miRNA:   3'- gUCUUC-GGGCCUaa--CCGGUGgGUucu -5'
29036 5' -56.1 NC_006146.1 + 3895 0.66 0.912434
Target:  5'- -cGAGGCCCaccGAcgaGGCC-CCCAAGGu -3'
miRNA:   3'- guCUUCGGGc--CUaa-CCGGuGGGUUCU- -5'
29036 5' -56.1 NC_006146.1 + 10672 0.66 0.918242
Target:  5'- gGGAGGCCCGG---GGCgaUACCCGcGGg -3'
miRNA:   3'- gUCUUCGGGCCuaaCCG--GUGGGUuCU- -5'
29036 5' -56.1 NC_006146.1 + 12750 0.68 0.833691
Target:  5'- cCAGAGGCCCGaGGUUGgagccggcgggcGCCAC-CAGGu -3'
miRNA:   3'- -GUCUUCGGGC-CUAAC------------CGGUGgGUUCu -5'
29036 5' -56.1 NC_006146.1 + 13236 0.68 0.822761
Target:  5'- cCAGAcccaguucuacaucAGCCUGGuccaggGGCUgguGCCCAAGAc -3'
miRNA:   3'- -GUCU--------------UCGGGCCuaa---CCGG---UGGGUUCU- -5'
29036 5' -56.1 NC_006146.1 + 13459 0.69 0.790113
Target:  5'- cCGGcAGCCCGGG-UGGCC-CCaGAGGc -3'
miRNA:   3'- -GUCuUCGGGCCUaACCGGuGGgUUCU- -5'
29036 5' -56.1 NC_006146.1 + 13933 0.67 0.865317
Target:  5'- gCGGGugGGCCCGGg--GGa-GCCCAGGAc -3'
miRNA:   3'- -GUCU--UCGGGCCuaaCCggUGGGUUCU- -5'
29036 5' -56.1 NC_006146.1 + 13975 0.67 0.856163
Target:  5'- -cGGAGCCCGucagcgccGCCACCCAGGc -3'
miRNA:   3'- guCUUCGGGCcuaac---CGGUGGGUUCu -5'
29036 5' -56.1 NC_006146.1 + 15829 0.68 0.833691
Target:  5'- cCAGAGGCCCGaGGUUGgagccggcgggcGCCAC-CAGGu -3'
miRNA:   3'- -GUCUUCGGGC-CUAAC------------CGGUGgGUUCu -5'
29036 5' -56.1 NC_006146.1 + 16537 0.69 0.790113
Target:  5'- cCGGcAGCCCGGG-UGGCC-CCaGAGGc -3'
miRNA:   3'- -GUCuUCGGGCCUaACCGGuGGgUUCU- -5'
29036 5' -56.1 NC_006146.1 + 18907 0.68 0.833691
Target:  5'- cCAGAGGCCCGaGGUUGgagccggcgggcGCCAC-CAGGu -3'
miRNA:   3'- -GUCUUCGGGC-CUAAC------------CGGUGgGUUCu -5'
29036 5' -56.1 NC_006146.1 + 19615 0.69 0.790113
Target:  5'- cCGGcAGCCCGGG-UGGCC-CCaGAGGc -3'
miRNA:   3'- -GUCuUCGGGCCUaACCGGuGGgUUCU- -5'
29036 5' -56.1 NC_006146.1 + 21070 0.68 0.82531
Target:  5'- -cGAGGCCC----UGGCCGCCCAc-- -3'
miRNA:   3'- guCUUCGGGccuaACCGGUGGGUucu -5'
29036 5' -56.1 NC_006146.1 + 21984 0.68 0.833691
Target:  5'- cCAGAGGCCCGaGGUUGgagccggcgggcGCCAC-CAGGu -3'
miRNA:   3'- -GUCUUCGGGC-CUAAC------------CGGUGgGUUCu -5'
29036 5' -56.1 NC_006146.1 + 22693 0.69 0.790113
Target:  5'- cCGGcAGCCCGGG-UGGCC-CCaGAGGc -3'
miRNA:   3'- -GUCuUCGGGCCUaACCGGuGGgUUCU- -5'
29036 5' -56.1 NC_006146.1 + 25062 0.68 0.833691
Target:  5'- cCAGAGGCCCGaGGUUGgagccggcgggcGCCAC-CAGGu -3'
miRNA:   3'- -GUCUUCGGGC-CUAAC------------CGGUGgGUUCu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.