miRNA display CGI


Results 21 - 40 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29036 5' -56.1 NC_006146.1 + 25771 0.69 0.790113
Target:  5'- cCGGcAGCCCGGG-UGGCC-CCaGAGGc -3'
miRNA:   3'- -GUCuUCGGGCCUaACCGGuGGgUUCU- -5'
29036 5' -56.1 NC_006146.1 + 28140 0.68 0.833691
Target:  5'- cCAGAGGCCCGaGGUUGgagccggcgggcGCCAC-CAGGu -3'
miRNA:   3'- -GUCUUCGGGC-CUAAC------------CGGUGgGUUCu -5'
29036 5' -56.1 NC_006146.1 + 28849 0.69 0.790113
Target:  5'- cCGGcAGCCCGGG-UGGCC-CCaGAGGc -3'
miRNA:   3'- -GUCuUCGGGCCUaACCGGuGGgUUCU- -5'
29036 5' -56.1 NC_006146.1 + 30126 0.66 0.900111
Target:  5'- aCAGAGcGCCCccaugcagggGGGUgggcaUGGCCACgcauCCGAGAg -3'
miRNA:   3'- -GUCUU-CGGG----------CCUA-----ACCGGUG----GGUUCU- -5'
29036 5' -56.1 NC_006146.1 + 30236 0.67 0.886862
Target:  5'- cCGGAuacCCCGGAaaUUGGCCGCaaaAAGGg -3'
miRNA:   3'- -GUCUuc-GGGCCU--AACCGGUGgg-UUCU- -5'
29036 5' -56.1 NC_006146.1 + 33170 0.66 0.89947
Target:  5'- cCAGGAGCuccagaaCCGGGUaGGCCcgggcaccCCCGGGGg -3'
miRNA:   3'- -GUCUUCG-------GGCCUAaCCGGu-------GGGUUCU- -5'
29036 5' -56.1 NC_006146.1 + 33222 0.67 0.849898
Target:  5'- gGGGAGCCgGGAUggGGCUGggguUCCGGGGg -3'
miRNA:   3'- gUCUUCGGgCCUAa-CCGGU----GGGUUCU- -5'
29036 5' -56.1 NC_006146.1 + 39306 0.7 0.723403
Target:  5'- gCAGAGGCCUGuGUacugggcucggcUGGCCucCCCGGGAa -3'
miRNA:   3'- -GUCUUCGGGCcUA------------ACCGGu-GGGUUCU- -5'
29036 5' -56.1 NC_006146.1 + 40372 0.69 0.780937
Target:  5'- aCAGGucauuGCCCGGAUugUGGCugcugacagCACCCuAGAc -3'
miRNA:   3'- -GUCUu----CGGGCCUA--ACCG---------GUGGGuUCU- -5'
29036 5' -56.1 NC_006146.1 + 40754 0.7 0.723403
Target:  5'- gGGGcuGGCCaCGGAcgUGGaCCuGCCCAAGAa -3'
miRNA:   3'- gUCU--UCGG-GCCUa-ACC-GG-UGGGUUCU- -5'
29036 5' -56.1 NC_006146.1 + 41602 0.73 0.561271
Target:  5'- gAGAGGCCCGGGgggcUGGUCcgcuggGCCCGGGc -3'
miRNA:   3'- gUCUUCGGGCCUa---ACCGG------UGGGUUCu -5'
29036 5' -56.1 NC_006146.1 + 42619 0.68 0.80803
Target:  5'- -cGAAGCCUGGGgcucGGCCGCCg---- -3'
miRNA:   3'- guCUUCGGGCCUaa--CCGGUGGguucu -5'
29036 5' -56.1 NC_006146.1 + 43275 0.66 0.900111
Target:  5'- aAGAGGCagcgggCCGGcg-GuGCCGCCCAGGu -3'
miRNA:   3'- gUCUUCG------GGCCuaaC-CGGUGGGUUCu -5'
29036 5' -56.1 NC_006146.1 + 43320 0.68 0.84189
Target:  5'- cCGGccGGCgCGGccucGGCCGCCCAGGGc -3'
miRNA:   3'- -GUCu-UCGgGCCuaa-CCGGUGGGUUCU- -5'
29036 5' -56.1 NC_006146.1 + 43628 0.67 0.849898
Target:  5'- aGGGAGUgggcggCGGGgcgUGGCCGCCUggGGa -3'
miRNA:   3'- gUCUUCGg-----GCCUa--ACCGGUGGGuuCU- -5'
29036 5' -56.1 NC_006146.1 + 43662 0.69 0.774434
Target:  5'- gAGggGCCCGGcucgcauucgcuccaGGCCcUCCGAGAa -3'
miRNA:   3'- gUCuuCGGGCCuaa------------CCGGuGGGUUCU- -5'
29036 5' -56.1 NC_006146.1 + 43955 0.66 0.900111
Target:  5'- cCAGAcgcGCCCGGAgaGcGCCAUCCugccagcggGAGAg -3'
miRNA:   3'- -GUCUu--CGGGCCUaaC-CGGUGGG---------UUCU- -5'
29036 5' -56.1 NC_006146.1 + 44767 0.68 0.799146
Target:  5'- -cGggGCCCGGcg-GGCggggaACCCAGGc -3'
miRNA:   3'- guCuuCGGGCCuaaCCGg----UGGGUUCu -5'
29036 5' -56.1 NC_006146.1 + 44948 0.69 0.790113
Target:  5'- cCAGggGCgCGGGgaGGCC-CCgGGGGa -3'
miRNA:   3'- -GUCuuCGgGCCUaaCCGGuGGgUUCU- -5'
29036 5' -56.1 NC_006146.1 + 45043 0.69 0.771628
Target:  5'- gAGAGGCCgGGGccGGCUcCCUAGGGg -3'
miRNA:   3'- gUCUUCGGgCCUaaCCGGuGGGUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.