miRNA display CGI


Results 1 - 20 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29036 5' -56.1 NC_006146.1 + 78495 1.08 0.003172
Target:  5'- uCAGAAGCCCGGAUUGGCCACCCAAGAa -3'
miRNA:   3'- -GUCUUCGGGCCUAACCGGUGGGUUCU- -5'
29036 5' -56.1 NC_006146.1 + 169744 0.71 0.683358
Target:  5'- gGGGAGcCCCGG---GGCgGCCCGGGGa -3'
miRNA:   3'- gUCUUC-GGGCCuaaCCGgUGGGUUCU- -5'
29036 5' -56.1 NC_006146.1 + 147768 0.7 0.713487
Target:  5'- -cGAAGCCCaGGcucccGGCCucuCCCAGGAa -3'
miRNA:   3'- guCUUCGGG-CCuaa--CCGGu--GGGUUCU- -5'
29036 5' -56.1 NC_006146.1 + 89689 0.66 0.912434
Target:  5'- aAGggGCCCGGGgaa-CgGCCUggGAu -3'
miRNA:   3'- gUCuuCGGGCCUaaccGgUGGGuuCU- -5'
29036 5' -56.1 NC_006146.1 + 167658 0.75 0.436767
Target:  5'- cCGGggGCCCGGGggcgUGucccGCgACCCGAGGg -3'
miRNA:   3'- -GUCuuCGGGCCUa---AC----CGgUGGGUUCU- -5'
29036 5' -56.1 NC_006146.1 + 89423 0.74 0.482961
Target:  5'- -uGAGGCCUGG-UUGGagGCCCAAGAg -3'
miRNA:   3'- guCUUCGGGCCuAACCggUGGGUUCU- -5'
29036 5' -56.1 NC_006146.1 + 83655 0.73 0.520566
Target:  5'- --cGGGCCagaccuccaccuuUGGGUUGGCCACCCAGGu -3'
miRNA:   3'- gucUUCGG-------------GCCUAACCGGUGGGUUCu -5'
29036 5' -56.1 NC_006146.1 + 41602 0.73 0.561271
Target:  5'- gAGAGGCCCGGGgggcUGGUCcgcuggGCCCGGGc -3'
miRNA:   3'- gUCUUCGGGCCUa---ACCGG------UGGGUUCu -5'
29036 5' -56.1 NC_006146.1 + 54714 0.72 0.62219
Target:  5'- aCGGcGGGCCCGGGUcagGGCgGCCgAGGGg -3'
miRNA:   3'- -GUC-UUCGGGCCUAa--CCGgUGGgUUCU- -5'
29036 5' -56.1 NC_006146.1 + 168812 0.71 0.683358
Target:  5'- gGGGAGcCCCGG---GGCgGCCCGGGGa -3'
miRNA:   3'- gUCUUC-GGGCCuaaCCGgUGGGUUCU- -5'
29036 5' -56.1 NC_006146.1 + 97368 0.71 0.642635
Target:  5'- gGGGAGCuCCGGAgccUGGCCAUgCAAa- -3'
miRNA:   3'- gUCUUCG-GGCCUa--ACCGGUGgGUUcu -5'
29036 5' -56.1 NC_006146.1 + 60958 0.72 0.62219
Target:  5'- -uGAGGCCCGGGgguggggGGUCACCUugguGGAu -3'
miRNA:   3'- guCUUCGGGCCUaa-----CCGGUGGGu---UCU- -5'
29036 5' -56.1 NC_006146.1 + 51845 0.77 0.337192
Target:  5'- gGGggGCUCGGGgccUGGCCcgaGCCCGGGGa -3'
miRNA:   3'- gUCuuCGGGCCUa--ACCGG---UGGGUUCU- -5'
29036 5' -56.1 NC_006146.1 + 130293 0.71 0.671187
Target:  5'- gAGAAGCagcggcggcaugCGGAgguucGGCCGCCCAGGGc -3'
miRNA:   3'- gUCUUCGg-----------GCCUaa---CCGGUGGGUUCU- -5'
29036 5' -56.1 NC_006146.1 + 45529 0.75 0.427835
Target:  5'- uGGggGCCUGGGccuccuugggcUUGGCCGCCCuGGc -3'
miRNA:   3'- gUCuuCGGGCCU-----------AACCGGUGGGuUCu -5'
29036 5' -56.1 NC_006146.1 + 86518 0.73 0.561271
Target:  5'- cCGGAGGCCauGA-UGGCCGCCCGGu- -3'
miRNA:   3'- -GUCUUCGGgcCUaACCGGUGGGUUcu -5'
29036 5' -56.1 NC_006146.1 + 167880 0.71 0.683358
Target:  5'- gGGGAGcCCCGG---GGCgGCCCGGGGa -3'
miRNA:   3'- gUCUUC-GGGCCuaaCCGgUGGGUUCU- -5'
29036 5' -56.1 NC_006146.1 + 92086 0.7 0.693455
Target:  5'- aCGGcuGCCUGGAcgcgugGGCCuCCCAGGGa -3'
miRNA:   3'- -GUCuuCGGGCCUaa----CCGGuGGGUUCU- -5'
29036 5' -56.1 NC_006146.1 + 143266 0.75 0.436767
Target:  5'- cCGGugacgcuGGCCCGGAacuucccUGGCCACCCAguGGAc -3'
miRNA:   3'- -GUCu------UCGGGCCUa------ACCGGUGGGU--UCU- -5'
29036 5' -56.1 NC_006146.1 + 158724 0.74 0.492484
Target:  5'- gUAGGAGCCCGa---GGCC-CCCGAGAu -3'
miRNA:   3'- -GUCUUCGGGCcuaaCCGGuGGGUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.