miRNA display CGI


Results 21 - 40 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29036 5' -56.1 NC_006146.1 + 40754 0.7 0.723403
Target:  5'- gGGGcuGGCCaCGGAcgUGGaCCuGCCCAAGAa -3'
miRNA:   3'- gUCU--UCGG-GCCUa-ACC-GG-UGGGUUCU- -5'
29036 5' -56.1 NC_006146.1 + 147768 0.7 0.713487
Target:  5'- -cGAAGCCCaGGcucccGGCCucuCCCAGGAa -3'
miRNA:   3'- guCUUCGGG-CCuaa--CCGGu--GGGUUCU- -5'
29036 5' -56.1 NC_006146.1 + 60958 0.72 0.62219
Target:  5'- -uGAGGCCCGGGgguggggGGUCACCUugguGGAu -3'
miRNA:   3'- guCUUCGGGCCUaa-----CCGGUGGGu---UCU- -5'
29036 5' -56.1 NC_006146.1 + 143266 0.75 0.436767
Target:  5'- cCGGugacgcuGGCCCGGAacuucccUGGCCACCCAguGGAc -3'
miRNA:   3'- -GUCu------UCGGGCCUa------ACCGGUGGGU--UCU- -5'
29036 5' -56.1 NC_006146.1 + 28849 0.69 0.790113
Target:  5'- cCGGcAGCCCGGG-UGGCC-CCaGAGGc -3'
miRNA:   3'- -GUCuUCGGGCCUaACCGGuGGgUUCU- -5'
29036 5' -56.1 NC_006146.1 + 40372 0.69 0.780937
Target:  5'- aCAGGucauuGCCCGGAUugUGGCugcugacagCACCCuAGAc -3'
miRNA:   3'- -GUCUu----CGGGCCUA--ACCG---------GUGGGuUCU- -5'
29036 5' -56.1 NC_006146.1 + 169744 0.71 0.683358
Target:  5'- gGGGAGcCCCGG---GGCgGCCCGGGGa -3'
miRNA:   3'- gUCUUC-GGGCCuaaCCGgUGGGUUCU- -5'
29036 5' -56.1 NC_006146.1 + 45529 0.75 0.427835
Target:  5'- uGGggGCCUGGGccuccuugggcUUGGCCGCCCuGGc -3'
miRNA:   3'- gUCuuCGGGCCU-----------AACCGGUGGGuUCu -5'
29036 5' -56.1 NC_006146.1 + 45043 0.69 0.771628
Target:  5'- gAGAGGCCgGGGccGGCUcCCUAGGGg -3'
miRNA:   3'- gUCUUCGGgCCUaaCCGGuGGGUUCU- -5'
29036 5' -56.1 NC_006146.1 + 51845 0.77 0.337192
Target:  5'- gGGggGCUCGGGgccUGGCCcgaGCCCGGGGa -3'
miRNA:   3'- gUCuuCGGGCCUa--ACCGG---UGGGUUCU- -5'
29036 5' -56.1 NC_006146.1 + 92086 0.7 0.693455
Target:  5'- aCGGcuGCCUGGAcgcgugGGCCuCCCAGGGa -3'
miRNA:   3'- -GUCuuCGGGCCUaa----CCGGuGGGUUCU- -5'
29036 5' -56.1 NC_006146.1 + 152270 0.69 0.752646
Target:  5'- uGGcuGCCUGGAgugcucugcUGGCCACCgAAGGu -3'
miRNA:   3'- gUCuuCGGGCCUa--------ACCGGUGGgUUCU- -5'
29036 5' -56.1 NC_006146.1 + 130293 0.71 0.671187
Target:  5'- gAGAAGCagcggcggcaugCGGAgguucGGCCGCCCAGGGc -3'
miRNA:   3'- gUCUUCGg-----------GCCUaa---CCGGUGGGUUCU- -5'
29036 5' -56.1 NC_006146.1 + 54714 0.72 0.62219
Target:  5'- aCGGcGGGCCCGGGUcagGGCgGCCgAGGGg -3'
miRNA:   3'- -GUC-UUCGGGCCUAa--CCGgUGGgUUCU- -5'
29036 5' -56.1 NC_006146.1 + 83655 0.73 0.520566
Target:  5'- --cGGGCCagaccuccaccuuUGGGUUGGCCACCCAGGu -3'
miRNA:   3'- gucUUCGG-------------GCCUAACCGGUGGGUUCu -5'
29036 5' -56.1 NC_006146.1 + 167658 0.75 0.436767
Target:  5'- cCGGggGCCCGGGggcgUGucccGCgACCCGAGGg -3'
miRNA:   3'- -GUCuuCGGGCCUa---AC----CGgUGGGUUCU- -5'
29036 5' -56.1 NC_006146.1 + 150088 0.68 0.799146
Target:  5'- aAGAGGCC---GUUGGCCACCCcAGu -3'
miRNA:   3'- gUCUUCGGgccUAACCGGUGGGuUCu -5'
29036 5' -56.1 NC_006146.1 + 44948 0.69 0.790113
Target:  5'- cCAGggGCgCGGGgaGGCC-CCgGGGGa -3'
miRNA:   3'- -GUCuuCGgGCCUaaCCGGuGGgUUCU- -5'
29036 5' -56.1 NC_006146.1 + 19615 0.69 0.790113
Target:  5'- cCGGcAGCCCGGG-UGGCC-CCaGAGGc -3'
miRNA:   3'- -GUCuUCGGGCCUaACCGGuGGgUUCU- -5'
29036 5' -56.1 NC_006146.1 + 164252 0.69 0.780937
Target:  5'- -uGggGCCUGGug-GGCCACCUc--- -3'
miRNA:   3'- guCuuCGGGCCuaaCCGGUGGGuucu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.