Results 1 - 20 of 169 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29036 | 5' | -56.1 | NC_006146.1 | + | 148377 | 0.67 | 0.886862 |
Target: 5'- aGGAcGCCUGGA--GGCgGaCCCGAGGg -3' miRNA: 3'- gUCUuCGGGCCUaaCCGgU-GGGUUCU- -5' |
|||||||
29036 | 5' | -56.1 | NC_006146.1 | + | 154336 | 0.67 | 0.889584 |
Target: 5'- -uGAAGCCCuGGAgaggggugaggacuuUggccucuggGGCCACCCGGGc -3' miRNA: 3'- guCUUCGGG-CCU---------------Aa--------CCGGUGGGUUCu -5' |
|||||||
29036 | 5' | -56.1 | NC_006146.1 | + | 151258 | 0.67 | 0.889584 |
Target: 5'- -uGAAGCCCuGGAgaggggugaggacuuUggccucuggGGCCACCCGGGc -3' miRNA: 3'- guCUUCGGG-CCU---------------Aa--------CCGGUGGGUUCu -5' |
|||||||
29036 | 5' | -56.1 | NC_006146.1 | + | 148180 | 0.67 | 0.889584 |
Target: 5'- -uGAAGCCCuGGAgaggggugaggacuuUggccucuggGGCCACCCGGGc -3' miRNA: 3'- guCUUCGGG-CCU---------------Aa--------CCGGUGGGUUCu -5' |
|||||||
29036 | 5' | -56.1 | NC_006146.1 | + | 145102 | 0.67 | 0.889584 |
Target: 5'- -uGAAGCCCuGGAgaggggugaggacuuUggccucuggGGCCACCCGGGc -3' miRNA: 3'- guCUUCGGG-CCU---------------Aa--------CCGGUGGGUUCu -5' |
|||||||
29036 | 5' | -56.1 | NC_006146.1 | + | 142024 | 0.67 | 0.889584 |
Target: 5'- -uGAAGCCCuGGAgaggggugaggacuuUggccucuggGGCCACCCGGGc -3' miRNA: 3'- guCUUCGGG-CCU---------------Aa--------CCGGUGGGUUCu -5' |
|||||||
29036 | 5' | -56.1 | NC_006146.1 | + | 157611 | 0.67 | 0.886862 |
Target: 5'- aGGAcGCCUGGA--GGCgGaCCCGAGGg -3' miRNA: 3'- gUCUuCGGGCCUaaCCGgU-GGGUUCU- -5' |
|||||||
29036 | 5' | -56.1 | NC_006146.1 | + | 154533 | 0.67 | 0.886862 |
Target: 5'- aGGAcGCCUGGA--GGCgGaCCCGAGGg -3' miRNA: 3'- gUCUuCGGGCCUaaCCGgU-GGGUUCU- -5' |
|||||||
29036 | 5' | -56.1 | NC_006146.1 | + | 151455 | 0.67 | 0.886862 |
Target: 5'- aGGAcGCCUGGA--GGCgGaCCCGAGGg -3' miRNA: 3'- gUCUuCGGGCCUaaCCGgU-GGGUUCU- -5' |
|||||||
29036 | 5' | -56.1 | NC_006146.1 | + | 157414 | 0.67 | 0.889584 |
Target: 5'- -uGAAGCCCuGGAgaggggugaggacuuUggccucuggGGCCACCCGGGc -3' miRNA: 3'- guCUUCGGG-CCU---------------Aa--------CCGGUGGGUUCu -5' |
|||||||
29036 | 5' | -56.1 | NC_006146.1 | + | 89372 | 0.66 | 0.892937 |
Target: 5'- -cGAGGCCCGaGGUcucguggUGGgCACCgAGGGg -3' miRNA: 3'- guCUUCGGGC-CUA-------ACCgGUGGgUUCU- -5' |
|||||||
29036 | 5' | -56.1 | NC_006146.1 | + | 33170 | 0.66 | 0.89947 |
Target: 5'- cCAGGAGCuccagaaCCGGGUaGGCCcgggcaccCCCGGGGg -3' miRNA: 3'- -GUCUUCG-------GGCCUAaCCGGu-------GGGUUCU- -5' |
|||||||
29036 | 5' | -56.1 | NC_006146.1 | + | 59758 | 0.66 | 0.915947 |
Target: 5'- aGGAGGCCagccgcccGGCCACCUggGGg -3' miRNA: 3'- gUCUUCGGgccuaa--CCGGUGGGuuCU- -5' |
|||||||
29036 | 5' | -56.1 | NC_006146.1 | + | 128171 | 0.66 | 0.912434 |
Target: 5'- gCAGcaccGCCCGGAUccgcGGCUgccaGCCCGAGc -3' miRNA: 3'- -GUCuu--CGGGCCUAa---CCGG----UGGGUUCu -5' |
|||||||
29036 | 5' | -56.1 | NC_006146.1 | + | 129049 | 0.66 | 0.906389 |
Target: 5'- -cGAGGcCCCGGuagccccUGGCCacgGCCCGGGu -3' miRNA: 3'- guCUUC-GGGCCua-----ACCGG---UGGGUUCu -5' |
|||||||
29036 | 5' | -56.1 | NC_006146.1 | + | 67593 | 0.66 | 0.906389 |
Target: 5'- gGGggGCCCGuGGcguUUGGCCuCCggugCGAGGa -3' miRNA: 3'- gUCuuCGGGC-CU---AACCGGuGG----GUUCU- -5' |
|||||||
29036 | 5' | -56.1 | NC_006146.1 | + | 82341 | 0.66 | 0.906389 |
Target: 5'- aAG-AGCCCGGGagucagGGCC-CCUAAGc -3' miRNA: 3'- gUCuUCGGGCCUaa----CCGGuGGGUUCu -5' |
|||||||
29036 | 5' | -56.1 | NC_006146.1 | + | 137707 | 0.66 | 0.900111 |
Target: 5'- cCAGGAGCacCCGGA--GGCCAggaCCGAGc -3' miRNA: 3'- -GUCUUCG--GGCCUaaCCGGUg--GGUUCu -5' |
|||||||
29036 | 5' | -56.1 | NC_006146.1 | + | 43955 | 0.66 | 0.900111 |
Target: 5'- cCAGAcgcGCCCGGAgaGcGCCAUCCugccagcggGAGAg -3' miRNA: 3'- -GUCUu--CGGGCCUaaC-CGGUGGG---------UUCU- -5' |
|||||||
29036 | 5' | -56.1 | NC_006146.1 | + | 30126 | 0.66 | 0.900111 |
Target: 5'- aCAGAGcGCCCccaugcagggGGGUgggcaUGGCCACgcauCCGAGAg -3' miRNA: 3'- -GUCUU-CGGG----------CCUA-----ACCGGUG----GGUUCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home