miRNA display CGI


Results 1 - 20 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29037 3' -51.5 NC_006146.1 + 113556 0.66 0.992718
Target:  5'- -cCUCCCUCaCCGAcACccgGGGCCccgcccccagAGAGCCa -3'
miRNA:   3'- aaGAGGGAG-GGUU-UG---CUCGG----------UUUUGG- -5'
29037 3' -51.5 NC_006146.1 + 96379 0.66 0.992718
Target:  5'- gUCgggCUCUgCC--GCGGGaCCAAGACCa -3'
miRNA:   3'- aAGa--GGGAgGGuuUGCUC-GGUUUUGG- -5'
29037 3' -51.5 NC_006146.1 + 91672 0.66 0.992718
Target:  5'- -gCUCUC-CUUggGCGGGCUGAGACUc -3'
miRNA:   3'- aaGAGGGaGGGuuUGCUCGGUUUUGG- -5'
29037 3' -51.5 NC_006146.1 + 79799 0.66 0.992718
Target:  5'- -cCUCaCCUCCCuc-CGcuGCCAcuGCCg -3'
miRNA:   3'- aaGAG-GGAGGGuuuGCu-CGGUuuUGG- -5'
29037 3' -51.5 NC_006146.1 + 128316 0.66 0.992718
Target:  5'- cUCUCUUUCCCGGGCuGGuCCugcuGGCCc -3'
miRNA:   3'- aAGAGGGAGGGUUUGcUC-GGuu--UUGG- -5'
29037 3' -51.5 NC_006146.1 + 111530 0.66 0.992718
Target:  5'- ----aCCUCCUGAccaACGAaaagGCCAAGGCCu -3'
miRNA:   3'- aagagGGAGGGUU---UGCU----CGGUUUUGG- -5'
29037 3' -51.5 NC_006146.1 + 12596 0.66 0.99251
Target:  5'- aUCUCCCUgCCCAucugcaugugcuACGAGaaugacaacCCGGGGCUg -3'
miRNA:   3'- aAGAGGGA-GGGUu-----------UGCUC---------GGUUUUGG- -5'
29037 3' -51.5 NC_006146.1 + 160328 0.66 0.992404
Target:  5'- uUUCUCCCguggggagaCCAcaggaagguacuugGGCGGGUCAGAACa -3'
miRNA:   3'- -AAGAGGGag-------GGU--------------UUGCUCGGUUUUGg -5'
29037 3' -51.5 NC_006146.1 + 34910 0.66 0.99163
Target:  5'- ---cCCCUCCCuuACGGuuGCCu-GGCCc -3'
miRNA:   3'- aagaGGGAGGGuuUGCU--CGGuuUUGG- -5'
29037 3' -51.5 NC_006146.1 + 65243 0.66 0.99163
Target:  5'- -cCUCgCUUCCCGugAACGAcGCCGGcgcuuGCCa -3'
miRNA:   3'- aaGAG-GGAGGGU--UUGCU-CGGUUu----UGG- -5'
29037 3' -51.5 NC_006146.1 + 41322 0.66 0.99163
Target:  5'- --gUCCCUCCCuguuuCGcGCCccAACCu -3'
miRNA:   3'- aagAGGGAGGGuuu--GCuCGGuuUUGG- -5'
29037 3' -51.5 NC_006146.1 + 69213 0.66 0.99163
Target:  5'- cUCUCCCcCCCucuAGCGccGCCcguAGCCc -3'
miRNA:   3'- aAGAGGGaGGGu--UUGCu-CGGuu-UUGG- -5'
29037 3' -51.5 NC_006146.1 + 114504 0.66 0.99163
Target:  5'- cUCUcaCCCUCgCGAGCG-GCCAcgcuuACCc -3'
miRNA:   3'- aAGA--GGGAGgGUUUGCuCGGUuu---UGG- -5'
29037 3' -51.5 NC_006146.1 + 60408 0.66 0.99163
Target:  5'- aUCUgcaCCCUCCUGGACcuGGCCGggguggaaugucAGACCa -3'
miRNA:   3'- aAGA---GGGAGGGUUUGc-UCGGU------------UUUGG- -5'
29037 3' -51.5 NC_006146.1 + 90249 0.66 0.99163
Target:  5'- gUUCuUCCCUCUCcAGC-AGCCuuAAGCCc -3'
miRNA:   3'- -AAG-AGGGAGGGuUUGcUCGGu-UUUGG- -5'
29037 3' -51.5 NC_006146.1 + 44582 0.66 0.99163
Target:  5'- -cCUCCUggCCCc--CGGGCCGcuGCCu -3'
miRNA:   3'- aaGAGGGa-GGGuuuGCUCGGUuuUGG- -5'
29037 3' -51.5 NC_006146.1 + 103738 0.66 0.991279
Target:  5'- --gUUCCUCCCGGACGccgcgcucaggagcGGCCAGcGGCUc -3'
miRNA:   3'- aagAGGGAGGGUUUGC--------------UCGGUU-UUGG- -5'
29037 3' -51.5 NC_006146.1 + 11107 0.66 0.990416
Target:  5'- -aCUUCUUCCCcGAUGGGCUc-GACCc -3'
miRNA:   3'- aaGAGGGAGGGuUUGCUCGGuuUUGG- -5'
29037 3' -51.5 NC_006146.1 + 16288 0.66 0.990416
Target:  5'- cUUC-CCCUUCCGcgucuGCGAGCUcuccAGCCa -3'
miRNA:   3'- -AAGaGGGAGGGUu----UGCUCGGuu--UUGG- -5'
29037 3' -51.5 NC_006146.1 + 71904 0.66 0.990416
Target:  5'- ---aCCCUCCUgcGCGcGGCCucuGACCu -3'
miRNA:   3'- aagaGGGAGGGuuUGC-UCGGuu-UUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.